Package: src:r-cran-gert
Version: 2.1.2+dfsg-1
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
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[...]
debian/rules binary
dh binary --buildsystem R
dh_update_autotools_config -O--buildsystem=R
dh_autoreconf -O--buildsystem=R
dh_auto_configure -O--buildsystem=R
dh_auto_build -O--buildsystem=R
debian/rules execute_after_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd inst/doc && Rscript -e "require(knitr); require(markdown); knit('gert.Rmd', 'gert.md');
markdownToHTML('gert.md', 'gert.html', options=c('use_xhtml', 'base64_images'));" && rm -f
gert.md
Loading required package: knitr
Loading required package: markdown
processing file: gert.Rmd
1/16
2/16 [unnamed-chunk-1]
3/16
4/16 [setup]
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7/16
8/16 [unnamed-chunk-3]
9/16
10/16 [unnamed-chunk-4]
11/16
12/16 [unnamed-chunk-5]
13/16
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15/16
16/16 [unnamed-chunk-7]
output file: gert.md
[1] "gert.md"
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=R
dh_prep -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-gert/ -O--buildsystem=R
I: R packages needed for DEP8: spelling, rmarkdown, testthat, ca-certificates
I: R Package: gert Version: 2.1.2
I: Building using R version 4.4.1-3
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Wed, 25 Sep 2024 08:26:53 +0900
mkdir -p
/<<BUILDDIR>>/r-cran-gert-2.1.2\+dfsg/debian/r-cran-gert/usr/lib/R/site-library
R CMD INSTALL -l
/<<BUILDDIR>>/r-cran-gert-2.1.2\+dfsg/debian/r-cran-gert/usr/lib/R/site-library --clean .
"--built-timestamp='Wed, 25 Sep 2024 08:26:53 +0900'"
* installing *source* package ‘gert’ ...
file ‘inst/doc/gert.html’ has the wrong MD5 checksum
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=
Using PKG_LIBS=-lgit2
Configuration OK!
** libs
using C compiler: ‘gcc (Debian 14.2.0-6) 14.2.0’
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o ignore.o
init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o
gcc -I"/usr/share/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS
-fvisibility=hidden -fpic -g -O2
-ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time
-D_FORTIFY_SOURCE=2 -c branch.c -o branch.o
gcc -I"/usr/share/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS
-fvisibility=hidden -fpic -g -O2
-ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time
-D_FORTIFY_SOURCE=2 -c clone.c -o clone.o
gcc -I"/usr/share/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS
-fvisibility=hidden -fpic -g -O2
-ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time
-D_FORTIFY_SOURCE=2 -c commit.c -o commit.o
In file included from commit.c:2:
commit.c: In function ‘R_git_commit_create’:
utils.h:28:29: error: passing argument 10 of ‘git_commit_create’ from
incompatible pointer type [-Wincompatible-pointer-types]
28 | #define no_const_workaround (git_commit **)
commit.c:162:60: note: in expansion of macro ‘no_const_workaround’
162 | msg.ptr, tree, number_parents, no_const_workaround
parents), "git_commit_create");
|
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/git2/repository.h:14,
from /usr/include/git2/annotated_commit.h:11,
from /usr/include/git2.h:11,
from utils.h:1:
/usr/include/git2/commit.h:369:27: note: expected ‘const git_commit **’ but
argument is of type ‘git_commit **’
369 | const git_commit *parents[]);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~
make[1]: *** [/usr/lib/R/etc/Makeconf:195: commit.o] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
ERROR: compilation failed for package ‘gert’
* removing ‘/<<PKGBUILDDIR>>/debian/r-cran-gert/usr/lib/R/site-library/gert’
dh_auto_install: error: R CMD INSTALL -l
/<<BUILDDIR>>/r-cran-gert-2.1.2\+dfsg/debian/r-cran-gert/usr/lib/R/site-library --clean .
"--built-timestamp='Wed, 25 Sep 2024 08:26:53 +0900'" returned exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202410/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
