Your message dated Sat, 28 Sep 2024 13:34:30 +0000 with message-id <e1suxag-001ujb...@fasolo.debian.org> and subject line Bug#1081631: fixed in pyzoltan 1.0.1-10 has caused the Debian Bug report #1081631, regarding pyzoltan: FTBFS error: ‘MPI_Session’ does not name a type to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1081631: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1081631 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: pyzoltan Version: 1.0.1-9 Severity: serious Tags: ftbfs Justification: FTBFS This package failed build from source when test-built. The rebuild was part of a Python 3.13 rebuild, but it reproduces in a pristine sid environment. Log snippet: creating build/temp.linux-aarch64-cpython-313/pyzoltan/core aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/trilinos -I/<<PKGBUILDDIR>>/pyzoltan/czoltan -I/usr/lib/python3/dist-packages/cyarray -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/include/python3.13 -c pyzoltan/core/zoltan.cpp -o build/temp.linux-aarch64-cpython-313/pyzoltan/core/zoltan.o -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from pyzoltan/core/zoltan.cpp:1291: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pyzoltan/core/zoltan.cpp:2287:3: error: ‘MPI_Session’ does not name a type 2287 | MPI_Session ob_mpi; | ^~~~~~~~~~~ error: command '/usr/bin/aarch64-linux-gnu-g++' failed with exit code 1 E: pybuild pybuild:389: build: plugin distutils failed with: exit code=1: /usr/bin/python3.13 setup.py build I: pybuild base:311: /usr/bin/python3 setup.py build ---------------------------------------------------------------------- Using Zoltan from: /usr/include/trilinos /usr/lib ---------------------------------------------------------------------- /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'setup_requres' warnings.warn(msg) running build running build_py creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan copying pyzoltan/api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan copying pyzoltan/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core copying pyzoltan/core/zoltan_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core copying pyzoltan/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/czoltan copying pyzoltan/czoltan/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/czoltan creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/tools copying pyzoltan/tools/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/tools copying pyzoltan/tools/run_parallel_script.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/tools creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core/tests copying pyzoltan/core/tests/zcomm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core/tests copying pyzoltan/core/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core/tests copying pyzoltan/core/tests/3d_partition.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core/tests copying pyzoltan/core/tests/test_zoltan.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core/tests copying pyzoltan/core/tests/geometric_partitioner.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core/tests running egg_info writing PyZoltan.egg-info/PKG-INFO writing dependency_links to PyZoltan.egg-info/dependency_links.txt writing requirements to PyZoltan.egg-info/requires.txt writing top-level names to PyZoltan.egg-info/top_level.txt reading manifest file 'PyZoltan.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyZoltan.egg-info/SOURCES.txt' copying pyzoltan/core/__init__.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core copying pyzoltan/core/msstdint.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core copying pyzoltan/core/zoltan.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core copying pyzoltan/core/zoltan_comm.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core copying pyzoltan/core/zoltan_dd.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core copying pyzoltan/czoltan/__init__.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/czoltan copying pyzoltan/czoltan/czoltan.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/czoltan copying pyzoltan/czoltan/czoltan_comm.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/czoltan copying pyzoltan/czoltan/czoltan_config.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/czoltan copying pyzoltan/czoltan/czoltan_dd.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/czoltan copying pyzoltan/czoltan/czoltan_types.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/czoltan copying pyzoltan/czoltan/mpi-compat.h -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/czoltan copying pyzoltan/core/tests/mesh.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyzoltan/build/pyzoltan/core/tests running build_ext building 'pyzoltan.core.zoltan' extension creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/pyzoltan creating build/temp.linux-aarch64-cpython-312/pyzoltan/core aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/trilinos -I/<<PKGBUILDDIR>>/pyzoltan/czoltan -I/usr/lib/python3/dist-packages/cyarray -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/include/python3.12 -c pyzoltan/core/zoltan.cpp -o build/temp.linux-aarch64-cpython-312/pyzoltan/core/zoltan.o -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from pyzoltan/core/zoltan.cpp:1291: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pyzoltan/core/zoltan.cpp:2287:3: error: ‘MPI_Session’ does not name a type 2287 | MPI_Session ob_mpi; | ^~~~~~~~~~~ error: command '/usr/bin/aarch64-linux-gnu-g++' failed with exit code 1 E: pybuild pybuild:389: build: plugin distutils failed with: exit code=1: /usr/bin/python3 setup.py build dh_auto_build: error: pybuild --build -i python{version} -p "3.13 3.12" returned exit code 13 make: *** [debian/rules:14: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2024-09-13T09:22:53Z If required, the full build log is available here (for the next 30 days): https://debusine.debian.net/artifact/709932/ This bug has been filed at "normal" severity, as we haven't started the transition to add 3.13 as a supported version, yet. This will be raised to RC as soon as that happens, hopefully well before trixie. Thanks, Stefano
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--- Begin Message ---Source: pyzoltan Source-Version: 1.0.1-10 Done: Antonio Valentino <antonio.valent...@tiscali.it> We believe that the bug you reported is fixed in the latest version of pyzoltan, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1081...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Antonio Valentino <antonio.valent...@tiscali.it> (supplier of updated pyzoltan package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sat, 28 Sep 2024 12:57:45 +0000 Source: pyzoltan Architecture: source Version: 1.0.1-10 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <debian-science-maintain...@lists.alioth.debian.org> Changed-By: Antonio Valentino <antonio.valent...@tiscali.it> Closes: 1081631 Changes: pyzoltan (1.0.1-10) unstable; urgency=medium . * Standards version bumped to 4.7.0, no changes. * Update dates in d/copyright. * debian/patches: - New 0006-MPI4-compat.patch (Closes: #1081631). Checksums-Sha1: 9378c126da191ceecc181dfd796053fc56dab898 2272 pyzoltan_1.0.1-10.dsc a82ac332a3d72ae2a97f9c38bbcd6c50bd123297 6124 pyzoltan_1.0.1-10.debian.tar.xz 30e2167e9ad45a1b970de19e389952c7eb5bd9ef 10329 pyzoltan_1.0.1-10_amd64.buildinfo Checksums-Sha256: dbaa1bc836535909dff30ea508e560ef308a6313acb64a7c47450faeb2ac1e7f 2272 pyzoltan_1.0.1-10.dsc 94548126ab2063862848b7953fd75807b923852a8f1438f9473c279c38232fc3 6124 pyzoltan_1.0.1-10.debian.tar.xz 7da0eb3e585c822b2439bd85cbe3de5cfddbda89a2cc813361a8700c70cdfea3 10329 pyzoltan_1.0.1-10_amd64.buildinfo Files: bbd2ff8d30174825a7870aeaca89d0fb 2272 python optional pyzoltan_1.0.1-10.dsc 1124da7c19d1901ba8103710d2f6f3c5 6124 python optional pyzoltan_1.0.1-10.debian.tar.xz 00e849e29ad5b79b113b21534383e7b2 10329 python optional pyzoltan_1.0.1-10_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJRBAEBCgA7FiEEO3DyCaX/1okDxHLF6/SKslePmBIFAmb3/o8dHGFudG9uaW8u dmFsZW50aW5vQHRpc2NhbGkuaXQACgkQ6/SKslePmBJQexAAgLh8ktU/kJnTcmk2 K2HzzqhTBqFEoEHxzrp4ARey04I5peKhrFaSpsg+BA8aGW5bOWjIQOnKCBaoPjQb FdHVGCxdENJN1ThOnSYkfqUtCGYGYOw5C43lOrIgu2X381zu3w1Y9ZTUnel3MsfN 9upRBKTRvPMP9OTWkgZCxm2vzih123ibnxmd6t+LwqfaYG7dhQGNWcrSkYIkPhHc 1tacFCni0H1P0aQJJEQiUaAGMojQLrR7yQcWNV0ADO7YlMuPpcXkJqbYxp1HbNAy ib8eDhLMXHutF9HLAfEGxq2e9nApnkIU9Ifbx35E3JUy6WQp2ykL6ZnxmUGnjgwr keY3tKBCY9tFhyP/e+/vgrdlhfPCoaXKqMKyj9cCSsa6C6WMXsUnVU5C61Ft/GSZ /mWSPp2ryvMQINPbCsQ0VlOWhyeAM5zQNE+QY9DbFnQS+sy9MVTotD5S5WqDJSwZ pB+/kh9UbUHqnQAmYfzS0vIr1gTk+4YwhcufblEBEP9QUFDO4A9fLZopWQMONImr VpfQ+f9eYeZfJMdrXnc+ZXZQmUtQLxjqUCjb5Fbk0+fJW2fVt7i3avCr/doP6SnI Q5hfpM/YZnxAWf8S06ji9K2+nME5hnWzqFmIPQwyqyb417POC/wEc0HrjfOg8z+q cGx9SeijN6hHnvziW7I7UvcrQ1o= =ys73 -----END PGP SIGNATURE-----
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