Your message dated Sun, 22 Sep 2024 13:19:06 +0000
with message-id <e1ssmuu-004ble...@fasolo.debian.org>
and subject line Bug#1082367: fixed in nitime 0.11-1
has caused the Debian Bug report #1082367,
regarding FTBFS: test_detect_lines_2dmode: AssertionError: Inconsistent results
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1082367: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1082367
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: nitime
Version: 0.10.2-2
Severity: serious
Tags: ftbfs
Justification: FTBFS
Dear maintainer,
During a test rebuild, nitime failed to rebuild.
-------------------------------------------------------------------------------
[...]
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build;
python3.12 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build
configfile: pyproject.toml
plugins: typeguard-4.3.0
collected 124 items
nitime/algorithms/tests/test_autoregressive.py ..... [ 4%]
nitime/algorithms/tests/test_coherence.py ..........s.... [ 16%]
nitime/algorithms/tests/test_correlation.py . [ 16%]
nitime/algorithms/tests/test_entropy.py ..... [ 20%]
nitime/algorithms/tests/test_event_related.py . [ 21%]
nitime/algorithms/tests/test_spectral.py ................ [ 34%]
nitime/analysis/tests/test_base.py . [ 35%]
nitime/analysis/tests/test_coherence.py ...... [ 40%]
nitime/analysis/tests/test_correlation.py . [ 41%]
nitime/analysis/tests/test_granger.py .. [ 42%]
nitime/analysis/tests/test_snr.py . [ 43%]
nitime/fmri/tests/test_io.py . [ 44%]
nitime/tests/test_algorithms.py ........ [ 50%]
nitime/tests/test_analysis.py ........ [ 57%]
nitime/tests/test_descriptors.py . [ 58%]
nitime/tests/test_lazy.py .. [ 59%]
nitime/tests/test_timeseries.py .................................... [ 88%]
nitime/tests/test_utils.py ..........F [ 97%]
nitime/tests/test_viz.py ... [100%]
=================================== FAILURES ===================================
___________________________ test_detect_lines_2dmode ___________________________
def test_detect_lines_2dmode():
"""
Test multi-sequence operation
"""
N = 1000
sig = np.cos( 2*np.pi*np.arange(N) * 20./N ) + np.random.randn(N) * .01
sig2d = np.row_stack( (sig, sig, sig) )
lines = utils.detect_lines(sig2d, (4, 8), low_bias=True, NFFT=2**12)
npt.assert_(len(lines)==3, 'Detect lines failed multi-sequence mode')
consistent1 = (lines[0][0] == lines[1][0]).all() and \
(lines[1][0] == lines[2][0]).all()
consistent2 = (lines[0][1] == lines[1][1]).all() and \
(lines[1][1] == lines[2][1]).all()
> npt.assert_(consistent1 and consistent2, 'Inconsistent results')
E AssertionError: Inconsistent results
nitime/tests/test_utils.py:304: AssertionError
=============================== warnings summary ===============================
nitime/algorithms/event_related.py:13
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/algorithms/event_related.py:13:
SyntaxWarning: invalid escape sequence '\h'
"""
nitime/analysis/tests/test_coherence.py::test_CoherenceAnalyzer
nitime/analysis/tests/test_coherence.py::test_SparseCoherenceAnalyzer
nitime/analysis/tests/test_coherence.py::test_SeedCoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/analysis/coherence.py:200:
RuntimeWarning: invalid value encountered in divide
delay[i, j] = this_phase / (2 * np.pi * self.frequencies)
nitime/analysis/tests/test_coherence.py::test_CoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/analysis/coherence.py:200:
RuntimeWarning: divide by zero encountered in divide
delay[i, j] = this_phase / (2 * np.pi * self.frequencies)
nitime/analysis/tests/test_coherence.py::test_CoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/algorithms/cohere.py:699:
RuntimeWarning: divide by zero encountered in divide
return (((np.abs(Rxy - Rxr * Rry)) ** 2) /
nitime/analysis/tests/test_coherence.py::test_CoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/algorithms/cohere.py:699:
RuntimeWarning: invalid value encountered in divide
return (((np.abs(Rxy - Rxr * Rry)) ** 2) /
nitime/analysis/tests/test_coherence.py::test_SparseCoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/analysis/coherence.py:523:
RuntimeWarning: invalid value encountered in divide
return self.relative_phases / (2 * np.pi * self.frequencies)
nitime/analysis/tests/test_coherence.py::test_SeedCoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/analysis/coherence.py:730:
RuntimeWarning: invalid value encountered in divide
return self.relative_phases / (2 * np.pi * self.frequencies)
nitime/analysis/tests/test_coherence.py::test_SeedCoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/analysis/coherence.py:94:
RuntimeWarning: In nitime.analysis, the provided input time-series is shorter
than the requested NFFT + n_overlap. All coherence values will be set to 1.
warnings.warn(e_s, RuntimeWarning)
nitime/tests/test_analysis.py::test_MorletWaveletAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/algorithms/wavelet.py:77:
RuntimeWarning: divide by zero encountered in log
wf = (2 * np.exp(-(np.log(f) - np.log(f0)) ** 2 / (2 * sfl ** 2)) *
nitime/tests/test_analysis.py::test_MorletWaveletAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/algorithms/wavelet.py:77:
RuntimeWarning: invalid value encountered in log
wf = (2 * np.exp(-(np.log(f) - np.log(f0)) ** 2 / (2 * sfl ** 2)) *
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED nitime/tests/test_utils.py::test_detect_lines_2dmode - AssertionError:...
============ 1 failed, 122 passed, 1 skipped, 12 warnings in 29.65s ============
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build; python3.12 -m pytest
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.12
returned exit code 13
make: *** [debian/rules:16: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2024-09-19T22:05:12Z
-------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here (for the next 30 days):
https://debusine.debian.net/artifact/799381/
About the archive rebuild: The build was made on debusine.debian.net,
on arm64 using sbuild.
You can find the build task here:
https://debusine.debian.net/work-request/38947/
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks,
Stefano
--- End Message ---
--- Begin Message ---
Source: nitime
Source-Version: 0.11-1
Done: Michael R. Crusoe <cru...@debian.org>
We believe that the bug you reported is fixed in the latest version of
nitime, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1082...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated nitime package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 22 Sep 2024 15:14:08 +0200
Source: nitime
Architecture: source
Version: 0.11-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 1065520 1082367
Changes:
nitime (0.11-1) unstable; urgency=medium
.
* Team upload.
* New upstream version supports numpy 2. Closes: #1082367, #1065520
* sphinx-conf-fix.patch deleted, it was upstreamed
* d/tests/control: run the tests on all supported versions of Python.
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Files:
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