--- Begin Message ---
Source: kissplice
Version: 2.6.2-3
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20240615 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -MD -MT
> modules/CMakeFiles/ks_run_modules.dir/run.cpp.o -MF
> CMakeFiles/ks_run_modules.dir/run.cpp.o.d -o
> CMakeFiles/ks_run_modules.dir/run.cpp.o -c /<<PKGBUILDDIR>>/modules/run.cpp
> [ 12%] Generating user_guide.pdf
> cd /<<PKGBUILDDIR>>/doc && /<<PKGBUILDDIR>>/doc/quiet.sh /usr/bin/pdflatex
> -halt-on-error -interaction=nonstopmode
> -output-directory=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/user_guide.tex
> /usr/bin/pdflatex -halt-on-error -interaction=nonstopmode
> -output-directory=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/user_guide.tex
> [ 13%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -MD -MT
> modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -MF
> CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o.d -o
> CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -c
> /<<PKGBUILDDIR>>/modules/PrintBcc.cpp
> This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
> (preloaded format=pdflatex)
> restricted \write18 enabled.
> entering extended mode
>
> (/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/user_guide.te
> x
> LaTeX2e <2023-11-01> patch level 1
> L3 programming layer <2024-03-14>
> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
> Document Class: article 2023/05/17 v1.4n Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))
> (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
> (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def))
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)))
> (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty
> (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)
> (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf))
> (/usr/share/texlive/texmf-dist/tex/generic/babel/locale/en/babel-english.tex)
> (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty[ 15%] Building
> CXX object
> thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.cpp.o
> )cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src &&
> /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE
> -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT
> thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.cpp.o
> -MF CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.cpp.o.d -o
> CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.cpp.o -c
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp
>
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/dvips.def)))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
> (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amscls/amsthm.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/tools/enumerate.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty[ 17%] Building
> CXX object
> thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.cpp.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src &&
> /usr/bin/c++ -DCLASSICAL_SPANNING
> -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT
> thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.cpp.o
> -MF CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.cpp.o.d -o
> CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.cpp.o -c
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp
>
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> No file user_guide.aux.
> *geometry* driver: auto-detecting
> *geometry* detected driver: pdftex
> *geometry* verbose mode - [ preamble ] result:
> * driver: pdftex
> * paper: letterpaper
> * layout: <same size as paper>
> * layoutoffset:(h,v)=(0.0pt,0.0pt)
> * modes:
> * h-part:(L,W,R)=(71.13188pt, 472.03123pt, 71.13188pt)
> * v-part:(T,H,B)=(56.9055pt, 652.70622pt, 85.35826pt)
> * \paperwidth=614.295pt
> * \paperheight=794.96999pt
> * \textwidth=472.03123pt
> * \textheight=652.70622pt
> * \oddsidemargin=-1.1381pt
> * \evensidemargin=-1.1381pt
> * \topmargin=-52.36449pt
> * \headheight=12.0pt
> * \headsep=25.0pt
> * \topskip=12.0pt
> * \footskip=30.0pt
> * \marginparwidth=35.0pt
> * \marginparsep=10.0pt
> * \columnsep=10.0pt
> * \skip\footins=10.8pt plus 4.0pt minus 2.0pt
> * \hoffset=0.0pt
> * \voffset=0.0pt
> * \mag=1000
> * \@twocolumnfalse
> * \@twosidefalse
> * \@mparswitchfalse
> * \@reversemarginfalse
> * (1in=72.27pt=25.4mm, 1cm=28.453pt)
>
> (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
> [Loading MPS to PDF converter (version 2006.09.02).]
> ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
> (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
> No file user_guide.toc.
> [1
> Non-PDF special ignored!
> <special> papersize=614.295pt,794.96999pt
> {/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
> Underfull \hbox (badness 10000) in paragraph at lines 58--60
>
>
> Underfull \hbox (badness 10000) in paragraph at lines 61--63
>
>
> Overfull \hbox (19.60004pt too wide) in paragraph at lines 68--69
> \T1/cmr/m/n/12 If you have ques-tions, please use pri-mar-ily the biostars
> fo-r
> um: $\T1/cmtt/m/n/12 www . biostars . org / t / kissplice/$
>
> Overfull \hbox (13.7669pt too wide) in paragraph at lines 71--76
> \T1/cmr/m/n/12 To do so, please sub-scribe at : $\T1/cmtt/m/n/12 http : / /
> lis
> ts . gforge . inria . fr / cgi-[]bin / mailman / listinfo /
> [2]
> Overfull \hbox (24.58913pt too wide) in paragraph at lines 153--162
> []\T1/cmr/m/n/12 The \T1/cmtt/m/n/12 sample_example \T1/cmr/m/n/12
> di-rec-tory
> con-tains four files \T1/cmtt/m/n/12 mock1.fq\T1/cmr/m/n/12 , \T1/cmtt/m/n/12
> m
> ock2.fq\T1/cmr/m/n/12 , \T1/cmtt/m/n/12 virus1.fq\T1/cmr/m/n/12 ,
> \T1/cmtt/m/n/
> 12 virus2.fq
> [3]
>
> LaTeX Warning: Reference `fig:extype1_C2' on page 4 undefined on input line
> 173
> .
>
>
> Overfull \hbox (24.90025pt too wide) in paragraph at lines 191--191
> []\T1/cmr/m/n/12 Figure 1: Con-tent of the file \T1/cmtt/m/n/12
> results_mock1_m
> ock2_virus1_virus2_k41_coherents_type_1.fa\T1/cmr/m/n/12 ,
>
> LaTeX Warning: Reference `fig:extype1_C0' on page 4 undefined on input line
> 201
> .
>
>
> Overfull \hbox (24.90025pt too wide) in paragraph at lines 205--205
> []\T1/cmr/m/n/12 Figure 2: Con-tent of the file \T1/cmtt/m/n/12
> results_mock1_m
> ock2_virus1_virus2_k41_coherents_type_1.fa\T1/cmr/m/n/12 ,
>
> LaTeX Warning: `!h' float specifier changed to `!ht'.
>
>
> LaTeX Warning: Reference `fig:extype1_C2' on page 4 undefined on input line
> 212
> .
>
> [4
> <./MBTD1_C2.png/<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp:
> In function ‘float read_coherence(gzFile, char*, int, int, fragment_info**,
> int, int, int, int, int, FILE*, int, char, int)’:
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp:439:44:
> warning: comparison of integer expressions of different signedness: ‘int’ and
> ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
> 439 | for (ii=offset_seed; ii<offset_seed+nb_seeds;
> ii++) {
> | ~~^~~~~~~~~~~~~~~~~~~~~
> In file included from /<<PKGBUILDDIR>>/modules/PrintBcc.cpp:51:
> /<<PKGBUILDDIR>>/modules/BubbleEnumeration.h: In function ‘bool
> read_edges_and_nodes_withoptimIO(char*, char*, char*, char*, char*, int*,
> TEdgeFunctor, TNodeFunctor&) [with TEdgeFunctor = Printer; TNodeFunctor =
> Printer]’:
> /<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:84:9: warning: ignoring return
> value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 84 | fscanf(info_file, "%d \n",&bcc_size );
> | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:85:9: warning: ignoring return
> value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 85 | fscanf(info_file, "%d \n",&records_per_file );
> | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> In file included from /<<PKGBUILDDIR>>/modules/PrintBcc.cpp:50:
> /<<PKGBUILDDIR>>/modules/CGraph.h: In function ‘bool
> read_node_noncontigous_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&)
> [with TFunctor = Printer]’:
> /<<PKGBUILDDIR>>/modules/CGraph.h:235:68: warning: ignoring return value of
> ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’
> [-Wunused-result]
> 235 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++)
> fgets(buffer, 100 * MAX, contents_file_node);
> |
> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h:236:9: warning: ignoring return value of
> ‘int fscanf(FILE*, const char*, ...)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 236 | fscanf(contents_file_node, "%d \n",&written_lines_before );
> | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h:237:9: warning: ignoring return value of
> ‘int fscanf(FILE*, const char*, ...)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 237 | fscanf(contents_file_node, "%d \n",&written_lines_for_record );
> | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h:248:58: warning: ignoring return value of
> ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’
> [-Wunused-result]
> 248 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100
> * MAX, node_file);
> |
> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/PrintBcc.cpp: In member function ‘void
> Printer::operator()(FILE*, int)’:
> /<<PKGBUILDDIR>>/modules/PrintBcc.cpp:64:12: warning: ignoring return value
> of ‘char* fgets(char*, int, FILE*)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 64 | fgets(buffer, 100 * MAX, in_file);
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h: In function ‘void
> read_edge_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with
> TFunctor = Printer]’:
> /<<PKGBUILDDIR>>/modules/CGraph.h:313:68: warning: ignoring return value of
> ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’
> [-Wunused-result]
> 313 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++)
> fgets(buffer, 100 * MAX, contents_file_edge);
> |
> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h:314:9: warning: ignoring return value of
> ‘int fscanf(FILE*, const char*, ...)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 314 | fscanf(contents_file_edge, "%d \n",&written_lines_before );
> | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h:315:9: warning: ignoring return value of
> ‘int fscanf(FILE*, const char*, ...)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 315 | fscanf(contents_file_edge, "%d \n",&written_lines_for_record );
> | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h:322:56: warning: ignoring return value of
> ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’
> [-Wunused-result]
> 322 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 *
> MAX, edge_file);
> |
> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp: In
> function ‘float read_coherence(gzFile, char*, int, int, fragment_info**, int,
> int, int, int, int, FILE*, int, char, int)’:
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp:439:44:
> warning: comparison of integer expressions of different signedness: ‘int’ and
> ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
> 439 | for (ii=offset_seed; ii<offset_seed+nb_seeds;
> ii++) {
> | ~~^~~~~~~~~~~~~~~~~~~~~
> >]
>
> LaTeX Warning: Reference `fig:quantif' on page 5 undefined on input line 275.
>
> [5 <./MBTD1_C0.png[ 18%] Building CXX object
> modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -MD -MT
> modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -MF
> CMakeFiles/ks_print_bcc.dir/Utils.cpp.o.d -o
> CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -c /<<PKGBUILDDIR>>/modules/Utils.cpp
> >] [6 <./quantifModel.png[ 20%] Building CXX object
> >thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src &&
> /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE
> -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT
> thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o
> -MF CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o.d -o
> CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o -c
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/interface_libchash.cpp
> >]
> Overfull \hbox (1.2115pt too wide) in paragraph at lines 329--330
> []\T1/cmtt/m/n/12
> graph_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX.nodes
> \T1/cmr/m/n/12 for the nodes
>
> Overfull \hbox (5.2035pt too wide) in paragraph at lines 341--342
> []\T1/cmtt/m/n/12
> results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ
> e_0a.fa\T1/cmr/m/n/12 : Sin-
>
> Overfull \hbox (9.44136pt too wide) in paragraph at lines 342--343
> []\T1/cmtt/m/n/12
> results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ
> e_0b.fa\T1/cmr/m/n/12 : Mul-
>
> Overfull \hbox (6.20883pt too wide) in paragraph at lines 343--344
> []\T1/cmtt/m/n/12
> results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ
> e_1.fa\T1/cmr/m/n/12 : al-ter-
>
> Overfull \hbox (3.92465pt too wide) in paragraph at lines 344--345
> []\T1/cmtt/m/n/12
> results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ
> e_2.fa\T1/cmr/m/n/12 : in-ex-
>
> Overfull \hbox (4.96884pt too wide) in paragraph at lines 345--346
> []\T1/cmtt/m/n/12
> results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ
> e_3.fa\T1/cmr/m/n/12 : short
> [7]
> Overfull \hbox (1.06976pt too wide) in paragraph at lines 346--347
> []\T1/cmtt/m/n/12 results_NameReadFile1_..._NameReadFileN_kXX_type_4
> .fa\T1/cmr
> /m/n/12 : all oth-ers, com-posed
>
> Underfull \hbox (badness 1655) in paragraph at lines 351--352
> []\T1/cmr/m/n/12 Since the read co-herency step may take a long time,
> \T1/cmtt/
> m/n/12 KisSplice \T1/cmr/m/n/12 pre-emp-tively
>
> Underfull \hbox (badness 2393) in paragraph at lines 351--352
> \T1/cmr/m/n/12 out-puts these six fasta files be-fore check-ing for read
> co-her
> ency in the di-rec-tory
>
> Underfull \hbox (badness 4752) in paragraph at lines 353--354
> []\T1/cmtt/m/n/12 KisSplice \T1/cmr/m/n/12 also cre-ates a sum-mary log file
> in
> the re-sults di-rec-tory named
> [8]
> Underfull \hbox (badness 10000) in paragraph at lines 410--411
>
> [9]
> Underfull \hbox (badness 10000) in paragraph at lines 424--426
>
> [10]
> (/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/user_guide.au
> x)
> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600
> tcrm1200
> [ 22%] Building CXX object
> modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -MD -MT
> modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -MF
> CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o.d -o
> CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -c
> /<<PKGBUILDDIR>>/modules/CycleCompression.cpp
> [ 24%] Building CXX object
> thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src &&
> /usr/bin/c++ -DCLASSICAL_SPANNING
> -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT
> thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o
> -MF CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o.d -o
> CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o -c
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/interface_libchash.cpp
> In file included from /<<PKGBUILDDIR>>/modules/BubbleEnumeration.cpp:61:
> /<<PKGBUILDDIR>>/modules/BubbleEnumeration.h: In function ‘bool
> read_edges_and_nodes_withoptimIO(char*, char*, char*, char*, char*, int*,
> TEdgeFunctor, TNodeFunctor&) [with TEdgeFunctor = EdgeLoader; TNodeFunctor =
> NodeLoader]’:
> /<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:84:9: warning: ignoring return
> value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 84 | fscanf(info_file, "%d \n",&bcc_size );
> | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:85:9: warning: ignoring return
> value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 85 | fscanf(info_file, "%d \n",&records_per_file );
> | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> In file included from /<<PKGBUILDDIR>>/modules/BubbleEnumeration.cpp:60:
> /<<PKGBUILDDIR>>/modules/CGraph.h: In function ‘bool
> read_node_noncontigous_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&)
> [with TFunctor = NodeLoader]’:
> /<<PKGBUILDDIR>>/modules/CGraph.h:235:68: warning: ignoring return value of
> ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’
> [-Wunused-result]
> 235 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++)
> fgets(buffer, 100 * MAX, contents_file_node);
> |
> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h:236:9: warning: ignoring return value of
> ‘int fscanf(FILE*, const char*, ...)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 236 | fscanf(contents_file_node, "%d \n",&written_lines_before );
> | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h:237:9: warning: ignoring return value of
> ‘int fscanf(FILE*, const char*, ...)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 237 | fscanf(contents_file_node, "%d \n",&written_lines_for_record );
> | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h:248:58: warning: ignoring return value of
> ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’
> [-Wunused-result]
> 248 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100
> * MAX, node_file);
> |
> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h: In member function ‘void
> NodeLoader::operator()(FILE*, int)’:
> /<<PKGBUILDDIR>>/modules/CGraph.h:198:12: warning: ignoring return value of
> ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’
> [-Wunused-result]
> 198 | fgets(buffer, 100 * MAX, node_file);
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h: In function ‘void
> read_edge_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with
> TFunctor = EdgeLoader]’:
> /<<PKGBUILDDIR>>/modules/CGraph.h:313:68: warning: ignoring return value of
> ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’
> [-Wunused-result]
> 313 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++)
> fgets(buffer, 100 * MAX, contents_file_edge);
> |
> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h:314:9: warning: ignoring return value of
> ‘int fscanf(FILE*, const char*, ...)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 314 | fscanf(contents_file_edge, "%d \n",&written_lines_before );
> | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h:315:9: warning: ignoring return value of
> ‘int fscanf(FILE*, const char*, ...)’ declared with attribute
> ‘warn_unused_result’ [-Wunused-result]
> 315 | fscanf(contents_file_edge, "%d \n",&written_lines_for_record );
> | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h:322:56: warning: ignoring return value of
> ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’
> [-Wunused-result]
> 322 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 *
> MAX, edge_file);
> |
> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/modules/CGraph.h: In member function ‘void
> EdgeLoader::operator()(FILE*, int)’:
> /<<PKGBUILDDIR>>/modules/CGraph.h:277:14: warning: ignoring return value of
> ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’
> [-Wunused-result]
> 277 | fgets(buffer, 100 * MAX, edge_file);
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> [ 25%] Building CXX object
> thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src &&
> /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE
> -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT
> thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o -MF
> CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o.d -o
> CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o -c
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp: In function ‘HTItem*
> SparseNextBucket(SparseIterator*)’:
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:580:44: warning:
> comparison of integer expressions of different signedness: ‘long int’ and
> ‘u_long’ {aka ‘long unsigned int’} [-Wsign-compare]
> 580 | for ( iter->posGroup++; iter->posGroup <
> SPARSE_GROUPS(iter->cBuckets);
> | ^
> mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600;
> nonstopmode; input tcrm1200
> This is METAFONT, Version 2.71828182 (TeX Live 2025/dev/Debian) (preloaded
> base=mf)
>
> (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm1200.mf/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:
> In function ‘HTItem* HashFind(HashTable*, u_long)’:
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in
> expansion of macro ‘READ_UL’
> 220 | READ_UL((ht)->fpData, cchData);
> \
> | ^~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1074:4: note: in
> expansion of macro ‘LOAD_AND_RETURN’
> 1074 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
> | ^~~~~~~~~~~~~~~
>
> (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
> (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf
> (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf
> Ok
> (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:
> In function ‘HTItem* HashFindLast(HashTable*)’:
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in
> expansion of macro ‘READ_UL’
> 220 | READ_UL((ht)->fpData, cchData);
> \
> | ^~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1079:4: note: in
> expansion of macro ‘LOAD_AND_RETURN’
> 1079 | LOAD_AND_RETURN(ht, ht->posLastFind);
> | ^~~~~~~~~~~~~~~
>
> Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf
> Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf
> Ok [0]/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp: In function
> ‘HTItem* HashFirstBucket(HashTable*)’:
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in
> expansion of macro ‘READ_UL’
> 220 | READ_UL((ht)->fpData, cchData);
> \
> | ^~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1142:15: note: in
> expansion of macro ‘LOAD_AND_RETURN’
> 1142 | LOAD_AND_RETURN(ht, retval);
> | ^~~~~~~~~~~~~~~
> [1] [2] [3] [4]/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp: In
> function ‘HTItem* HashNextBucket(HashTable*)’:
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in
> expansion of macro ‘READ_UL’
> 220 | READ_UL((ht)->fpData, cchData);
> \
> | ^~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1154:15: note: in
> expansion of macro ‘LOAD_AND_RETURN’
> 1154 | LOAD_AND_RETURN(ht, retval);
> | ^~~~~~~~~~~~~~~
> [5]/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp: In function
> ‘HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)’:
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1263:9: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 1263 | fread(szMagicKey, 1, 4, fp);
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1272:4: note: in
> expansion of macro ‘READ_UL’
> 1272 | READ_UL(fp, ht->cchKey);
> | ^~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1273:4: note: in
> expansion of macro ‘READ_UL’
> 1273 | READ_UL(fp, ht->cItems);
> | ^~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1274:4: note: in
> expansion of macro ‘READ_UL’
> 1274 | READ_UL(fp, ht->cDeletedItems);
> | ^~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1277:4: note: in
> expansion of macro ‘READ_UL’
> 1277 | READ_UL(fp, cchKey);
> | ^~~~~~~
> [6]/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1279:9: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 1279 | fread(rgchKeys, 1, cchKey, fp);
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1284:7: note: in
> expansion of macro ‘READ_UL’
> 1284 | READ_UL(fp, bck->data); /* all we need if dataRead is
> NULL */
> | ^~~~~~~
> [7] [8] [9] [10] [11] [12] [27] [29])
> (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:
> In function ‘u_long SparseRead(FILE*, SparseBin**)’:
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:620:4: note: in
> expansion of macro ‘READ_UL’
> 620 | READ_UL(fp, cBuckets); /* actually, cBuckets is
> stored */
> | ^~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning:
> ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’
> declared with attribute ‘warn_unused_result’ [-Wunused-result]
> 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:625:10: note: in
> expansion of macro ‘READ_UL’
> 625 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
> | ^~~~~~~
>
> Ok [100] [109] [98] [99] [108])
> (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf
> Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44]
> [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95]
> [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137]
> [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149]
> [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161]
> [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174]
> [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246])
> (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf
> Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
> (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf
> Ok [185] [178] [179] [170] [186])
> (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf
> Ok [188] [189] [190]) ) ) )
> (some charht values had to be adjusted by as much as 0.06665pt)
> Font metrics written on /<<PKGBUILDDIR>>/obj-x86_64-linu
> x-gnu/doc/tcrm1200.tfm.
> Output written on /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/
> doc/tcrm1200.600gf (128 characters, 28032 bytes).
> Transcript written on /<<PKGBUILDDIR>>/obj-x86_64-linux-
> gnu/doc/tcrm1200.log.
> mktexpk: `mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode;
> input tcrm1200' failed to make tcrm1200.600pk.
> kpathsea: Appending font creation commands to
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/missfont.log.
>
>
> LaTeX Warning: There were undefined references.
>
>
> LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
>
> )
> (see the transcript file for additional information)
> !pdfTeX error: /usr/bin/pdflatex (file tcrm1200): Font tcrm1200 at 600 not
> foun
> d
> ==> Fatal error occurred, no output PDF file produced!
> make[3]: *** [doc/CMakeFiles/doc.dir/build.make:78: doc/user_guide.pdf] Error
> 1
The full build log is available from:
http://qa-logs.debian.net/2024/06/15/kissplice_2.6.2-3_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240615;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240615&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
pgp35pzE_iL16.pgp
