On Tue, 2 Jul 2024 14:46:29 +0200 Lucas Nussbaum <lu...@debian.org> wrote: > Source: kissplice > Version: 2.6.2-3 > Severity: serious > Justification: FTBFS > Tags: trixie sid ftbfs > User: lu...@debian.org > Usertags: ftbfs-20240702 ftbfs-trixie > > Hi, > > During a rebuild of all packages in sid, your package failed to build > on amd64. > > > Relevant part (hopefully): >> The following tests FAILED: >> 3 - KisspliceDBGTest (Failed) >> 4 - KisspliceTwoSequencesTest (Failed) >> 5 - KisspliceGraphAndSequenceTest (Failed) >> 6 - KisspliceGraphTest (Failed) >> Errors while running CTest
This failure can be fixed by applying upstream commit 640600862b1f77205e1bd1d6ce323f63a2f950cd (patch attached), which is also part of the upstream release 2.6.5. -- Benjamin Drung Debian & Ubuntu Developer
From: Francois Gindraud <francois.gindr...@inria.fr> Date: Fri, 24 May 2024 16:19:49 +0200 Subject: Fix syntax warning on regexp Use raw string literal to prevent python from trying to interpret the \d Closes: #1074658 LP: #2075171 Origin: upstream, https://gitlab.inria.fr/erable/kissplice/-/commit/640600862b1f77205e1bd1d6ce323f63a2f950cd --- kissplice.in.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/kissplice.in.py b/kissplice.in.py index 1c51fdf..0346f01 100755 --- a/kissplice.in.py +++ b/kissplice.in.py @@ -550,7 +550,7 @@ def splitT1T234(fName, fNameT1, fNameT234): f=open(fName,"r") f1=open(fNameT1,"w") f234=open(fNameT234,"w") - retype = re.compile('Type_\d+') + retype = re.compile(r"Type_\d+") line=f.readline() while line: t=retype.search(line).group() @@ -1206,7 +1206,7 @@ def check_read_coverage_and_sort_all_bubbles(internal_bindir, readfiles, workdir l = cofile.readlines() l.sort(reverse=True) cofile.close() - retype = re.compile('Type_\d+') + retype = re.compile(r"Type_\d+") for event in l: try: type = retype.search(event).group() @@ -1250,7 +1250,7 @@ def sort_all_bubbles(internal_bindir, readfiles, workdir, outdir, kval, output_s concatenate_graph_all_log_bcc_to_all_bcc_type0(workdir, kval, output_snps) - retype = re.compile('Type_\d+') + retype = re.compile(r"Type_\d+") eventsName = ["type_0a", "type_0b", "type_1", "type_2", "type_3", "type_4"] filel = [] for i in range(0,6):
