Your message dated Sun, 14 Jul 2024 17:40:29 +0000 with message-id <e1st3d3-002idk...@fasolo.debian.org> and subject line Bug#1074528: fixed in r-bioc-eir 1.44.0+ds-1~0exp has caused the Debian Bug report #1074528, regarding r-bioc-eir: autopkgtest regression with r-base 4.4.1 (i386) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1074528: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1074528 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: r-bioc-eir Version: 0.40.2+dfsg-1 Severity: serious X-Debbugs-Cc: Dirk Eddelbuettel <e...@debian.org> User: debian...@lists.debian.org Usertags: regression Hi Maintainer r-bioc-eir's autopkgtest regresses when tested with r-base 4.4.1 [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debian.net/packages/r/r-bioc-eir/testing/i386/ 202s checking descriptors 204s [1] "52614449152, 52615498752, 52616546304, 52616546305, 52617594880, 52617594881, 52618645504, 52619700224, 52619708416, 52620740608, 52620742656, 52621789184, 52621789185, 52622853120, 52622853121, 53688190976, 53688190977, 53688192000, 53688192001, 53688192002, 53688193024, 53688193025, 53688193026, 53688193027, 53688193028, 53688206336, 53688206337, 53688207360, 53689239552, 53689239553, 53689239554, 53689239555, 53689239556, 53689239557, 53689239558, 53689240576, 53689240577, 53689241600, 53689241601, 53689241602, 53689247744, 53689247745, 53689247746, 53689247747, 53689247748, 53689255936, 53689255937, 53690288128, 53690288129, 53690288130, 53690288131, 53690288132, 53690288133, 53690290176, 53690290177, 53690290178, 53690290179, 53690296320, 53690296321, 53690303488, 53690303489, 53690303490, 53690303491, 53690304512, 53690304513, 53690304514, 53690304515, 53691336704, 53691336705, 53691336706, 53691336707, 53691336708, 53691336709, 53691338752, 53691338753, 53691338754, 53692385280, 53692385281, 53692385282, 53692385283, 53692386304, 53692393472, 53692400640, 53692400641, 53692400642, 53692400643, 53692401664, 53693433856, 53693434880, 53693434881, 53693435904, 53693449216, 53693449217, 53693449218, 53693449219, 53694482432, 53694482433, 53695546368, 53695546369, 54764032000, 54765086720, 54765094912, 54766129152, 54768239616, 54768239617, 55835682816, 55835682817, 55835691008, 55836725248, 55836738560, 55836738561, 55836739584, 55838835712, 55838835713, 62279190528, 62280238080, 62280238081, 69797479424, 69797480448, 69797480449" 204s [1] 0.09880833 -0.50000000 0.50000000 -0.50000000 0.44497142 -0.50000000 204s [7] -0.46578560 -0.14094824 -0.50000000 0.50000000 -0.50000000 0.50000000 204s [13] 0.32523258 0.50000000 0.50000000 -0.15679727 0.50000000 0.50000000 204s [19] -0.14531272 0.50000000 -0.24475611 -0.50000000 -0.50000000 0.50000000 204s [25] 0.50000000 -0.50000000 -0.50000000 -0.50000000 0.50000000 -0.50000000 204s [31] -0.50000000 0.50000000 -0.02047354 0.50000000 0.42086814 0.49316889 204s [37] 0.50000000 0.13759897 -0.50000000 -0.28723564 204s [1] 0.067484805 0.035798683 0.222776498 -0.087693802 0.078308303 204s [6] 0.014039434 0.145663927 0.146636241 -0.115706962 -0.041990705 204s [11] -0.017631332 -0.159832996 0.022971835 0.143518592 0.079955212 204s [16] 0.011394956 -0.007657527 -0.038522903 0.040856140 -0.033808531 204s [21] -0.182359089 -0.023518567 -0.184551059 -0.014498910 -0.060822373 204s [26] 0.050760008 0.091104077 -0.250043683 0.002980295 0.042988884 204s [31] -0.195190130 0.002355715 0.224217296 0.298889809 0.014137881 204s [36] -0.135371953 -0.288479428 -0.052005737 -0.245504847 0.015318735 204s Timing stopped at: 12.97 0.12 25.3 204s Error in checkDescriptor(conn, rid, descriptorIndex = i) : 204s descriptor mismatch found! db version does not match the just computed one 204s In addition: Warning message: 204s call dbDisconnect() when finished working with a connection 204s eiQuery 204s using runId 0 204s eiQuery test 1 204s Timing stopped at: 0.031 0.004 0.035 204s Error in eiQuery(runId, sdfsample[1:2], K = 15, asSimilarity = TRUE, dir = test_dir) : 204s no information found for 0 204s Timing stopped at: 0.007 0 0.006 204s Error in eiPerformanceTest(runId, K = 22, dir = test_dir) : 204s no information found for 0 204s using runId 0 204s eiAdd test1 204s Timing stopped at: 0.264 0.004 0.267 204s Error in eiAdd(runId, examples[1:2], dir = test_dir) : 204s no information found for run 0 204s Timing stopped at: 0.002 0.004 0.007 204s Error in eiCluster(runId, K = numNbrs, minNbrs = minNbrs, cutoff = 1 - : 204s no information found for 0 204s 204s 204s RUNIT TEST PROTOCOL -- Sat Jun 29 16:27:30 2024 204s *********************************************** 204s Number of test functions: 8 204s Number of errors: 5 204s Number of failures: 0
--- End Message ---
--- Begin Message ---Source: r-bioc-eir Source-Version: 1.44.0+ds-1~0exp Done: Michael R. Crusoe <cru...@debian.org> We believe that the bug you reported is fixed in the latest version of r-bioc-eir, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1074...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Michael R. Crusoe <cru...@debian.org> (supplier of updated r-bioc-eir package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Fri, 12 Jul 2024 11:16:26 +0200 Source: r-bioc-eir Architecture: source Version: 1.44.0+ds-1~0exp Distribution: experimental Urgency: medium Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net> Changed-By: Michael R. Crusoe <cru...@debian.org> Closes: 1074528 Changes: r-bioc-eir (1.44.0+ds-1~0exp) experimental; urgency=medium . * Team upload. * New upstream version * Drop support for 32-bit architectures, following upstream's decision Closes: #1074528 * d/control: Skip building on 32-bit systems. Checksums-Sha1: 14ca92a16c8a958b866aebdbf3c1ba7adad5af79 2195 r-bioc-eir_1.44.0+ds-1~0exp.dsc c4b8af7c763a43a7eb2cd3fc1439b4ff47620d84 61904 r-bioc-eir_1.44.0+ds.orig.tar.xz 3dc7da6434d238443b4e18e30a17fa45468b7aa6 5784 r-bioc-eir_1.44.0+ds-1~0exp.debian.tar.xz daad60e91b81621c1e4b7b74592cf504ac1536be 11585 r-bioc-eir_1.44.0+ds-1~0exp_source.buildinfo Checksums-Sha256: 030d8afab12cc73582d67ca4892ed0e02e550b62e70b8baf99dce82a326cf123 2195 r-bioc-eir_1.44.0+ds-1~0exp.dsc 1d901ba436738f52b0becbfe80e980dd44f0485bcefdc9857102d6d31349318e 61904 r-bioc-eir_1.44.0+ds.orig.tar.xz 94645c5d5a3549aeb550c5b64635992998dda0d2bdcd3d309f45ebbb35427c1d 5784 r-bioc-eir_1.44.0+ds-1~0exp.debian.tar.xz a19b7e499ba85cc5f88361224d9b8eff9e1b10c921dfccbee531329351ac646e 11585 r-bioc-eir_1.44.0+ds-1~0exp_source.buildinfo Files: cfda098e42e6c201db388325691fba08 2195 gnu-r optional r-bioc-eir_1.44.0+ds-1~0exp.dsc 842b78622828dda8e26307b17988f6ef 61904 gnu-r optional r-bioc-eir_1.44.0+ds.orig.tar.xz 55e7866906e0bdb4f52b463f223abd6f 5784 gnu-r optional r-bioc-eir_1.44.0+ds-1~0exp.debian.tar.xz 26b2f0cf02d7e9381e3374c4f51b9286 11585 gnu-r optional r-bioc-eir_1.44.0+ds-1~0exp_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmaUCr0ACgkQPCZ2P2xn 5uJGyQ/9GJwKmWwSZgIocn5PMqXtz8iNiS57Di3V09riZnCY+pwzPWsDx08IKTsu IXTPNf3i9qBo5xDu249gIwzNbf1ONMi/3603NAdc0OVaqRrbPtfZTmq3eTlvHxIf 6NsVKCbQS9jrIs0VykvA7ZZ8cy9R7vp1fVutNsxEhpGY/2mPPp9OATSelCFsSFQA cFLcuCQlRLVDp1PF+VHO+wEnZqv4jPcHdKX3zzvggTfNtmre1xyNpyeZ2QbzM0Ys zrBL+t/b80aHT3+XIYAU7UFmPmJZbH1j3qD0rwwBeDWOxDz8F3NYKtnqLH+YpPHX xPEZLWdL6cB4yDKyVo2FzYAUd6yUllFPgowHrB4vH2SyCqchcncyujVMkGuQNBAn j60Q54gXDXIYiIqmr4l7KLUBKCcQVQUBzIYaKXHv7YTliDrDUkQd97D12uldSK9s 78XXIXjTR2gMfi/mMW7DLtnZIVZvdhj3IAqpd6U63U4OmyKcuRyge0eOoJej9ckz 41HcHvTUId6r5BuLEyEE/bzfhnh06U+mlWlr7Gk8i84R8UsJLu7/JQdVmCZcDdv9 1UODhGM2sW/MgAc6vwDJQ9Ewkwox9jfTkPr30Y8xR/oPYC0FdAPrBAtnUweTmdk/ aYxrLyVRU3kmqmx6mn38dFgWIwwojQU1nUmH7q7E8pM0X7cER2k= =aOh4 -----END PGP SIGNATURE-----
pgpBEE85oca3t.pgp
Description: PGP signature
--- End Message ---
