Your message dated Sun, 14 Jul 2024 13:19:35 +0000 with message-id <e1ssz8z-000urn...@fasolo.debian.org> and subject line Bug#1076166: fixed in mdtraj 1.10.0-3 has caused the Debian Bug report #1076166, regarding mdtraj: fails to build to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1076166: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1076166 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: mdtraj Version: 1.10.0-2 Severity: serious Tags: ftbfs Justification: fails to build from source (but built successfully in the past) X-Debbugs-Cc: sudipm.mukher...@gmail.com Dear Maintainer, mdtraj is failing to build from source with the error: dh_numpy3 mv debian/python3-mdtraj.substvars.new debian/python3-mdtraj.substvars mv debian/python-mdtraj-doc.substvars.new debian/python-mdtraj-doc.substvars # setup.py builds the static lib libtheobald.a for each python version # but dh_python3 can't tell the difference between the different builds, # since py3.11 compiles libtheobald.o with -fwrapv, where py3.12 uses -fno-strict-overflow # So clean up manually (assume the binary difference is not an issue) rm -f debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib/libtheobald.a rmdir -p --ignore-fail-on-non-empty debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib rmdir: failed to remove 'debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib': No such file or directory make[1]: *** [debian/rules:59: execute_after_dh_python3] Error 1 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:11: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 The latest log can be seen at https://buildd.debian.org/status/fetch.php?pkg=mdtraj&arch=amd64&ver=1.10.0-2%2Bb1&stamp=1720720921&raw=0 -- Regards Sudip
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--- Begin Message ---Source: mdtraj Source-Version: 1.10.0-3 Done: Drew Parsons <dpars...@debian.org> We believe that the bug you reported is fixed in the latest version of mdtraj, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1076...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Drew Parsons <dpars...@debian.org> (supplier of updated mdtraj package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 14 Jul 2024 12:37:33 +0200 Source: mdtraj Architecture: source Version: 1.10.0-3 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Drew Parsons <dpars...@debian.org> Closes: 1076166 Changes: mdtraj (1.10.0-3) unstable; urgency=medium . * only remove python3-specific mdtraj/core/lib (from libtheobald.a) if the excess dir exists (it's only left over if there is more than one supported python version). Closes: #1076166. Checksums-Sha1: 7e695ae3aa8ab3d354addb3b11689fff63387862 2635 mdtraj_1.10.0-3.dsc 4b546334338f9452a56b7588acbc2209d962edc5 301160 mdtraj_1.10.0-3.debian.tar.xz Checksums-Sha256: d07e934e5fbc55b34630a703774044e8d2e07903c363aeb3d18bcd9e39b83208 2635 mdtraj_1.10.0-3.dsc 0ec2d61c7655b0af25ffd3315e94077a369817fff6b147bfdd05f9a98cabb461 301160 mdtraj_1.10.0-3.debian.tar.xz Files: d83a827495056c5bdea3606c4ef93fed 2635 python optional mdtraj_1.10.0-3.dsc 5b68dd90c3b67950a3316dc8526658c8 301160 python optional mdtraj_1.10.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmaTys0ACgkQVz7x5L1a AfqL1A//QHSdsymTQqjK59EhtKsgPh0pCQCCZ3QXwdMulNCtGOE2yNJVh7PjouTY 2mb3BbYTHTGW8exZmottJzVeVReQrYeKhRH7ZvoI2biT2onN3yM9Jr2WAoejrZp+ 9f15Wcys1gz1oGvlIoyrI/4bc71TAcChw3atqoIf4kCzi1weCEO98JGAn8SIdcsC ocdAFrVFRVQ+CtkHXrrAWU1XydQjce3Z72VZaaDVV0C8Wj9el1/+KAdcT7wqIsps 9jSCapAzhMQHuPIRrmGPtBLa1myPrY26uZPeDt2ihvi8BWiAvh1IVBETG04ehh5T pWi8bp3n4kbhxp95hX9h6kGvy7Gnve2ofVL0oNhhP9hJyeeVldT11TUAZEr+8rI/ Ykctt3lASL9AyqOtwlMx6aPFezYoaez9zKDBlvqL3ikf6BNsgYUCyUP6x3dbF4/B tVXe7QvmSevIY4WRR2S5YniJOfoT0Z4yjUlMcXLPjBh6iCrgwMPOUxbO8LlaLKLG bbv8tygXkN2NrCrsP7ufsAAnbq3zoT4eOu4wR7myb2teF2952P36Elr9vumzCFVd zalatoqwtcFoVY6OEi8ZS3VGhFVLUUxOoqbC7ro0kssGL9tETKP2DI62biU3PiTP /wR2qNGVgKWY7qpaIzeBX20Dov7qfEfRkYkto9AFgZp+9OByHhE= =2m46 -----END PGP SIGNATURE-----
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