Your message dated Thu, 04 Jul 2024 17:19:54 +0000
with message-id <e1spq7e-002pyb...@fasolo.debian.org>
and subject line Bug#1071782: fixed in skimage 0.24.0-1
has caused the Debian Bug report #1071782,
regarding skimage: autopkgtest needs update for new version of pytest on s390x
to be marked as done.
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If this is not the case it is now your responsibility to reopen the
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1071782: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1071782
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--- Begin Message ---
Source: skimage
Version: 0.22.0-3
Severity: serious
X-Debbugs-CC: pyt...@packages.debian.org
Tags: sid trixie
User: debian...@lists.debian.org
Usertags: needs-update
Control: affects -1 src:pytest
Dear maintainer(s),
With a recent upload of pytest the autopkgtest of skimage fails in
testing on s390x when that autopkgtest is run with the binary packages
of pytest from unstable. It passes when run with only packages from
testing. In tabular form:
pass fail
pytest from testing 8.1.2-1
skimage from testing 0.22.0-3
all others from testing from testing
I copied some of the output at the bottom of this report. I'll note that
s390x is our only big endian architecture with autopgktest.
Currently this regression is blocking the migration of pytest to testing
[1]. Of course, pytest shouldn't just break your autopkgtest (or even
worse, your package), but due to the nature of the package pytest I
suspect that your package just needs to update to the new situation.
If this is a real problem in your package (and not only in your
autopkgtest), the right binary package(s) from pytest should really add
a versioned Breaks on the unfixed version of (one of your) package(s).
Note: the Breaks is nice even if the issue is only in the autopkgtest as
it helps the migration software to figure out the right versions to
combine in the tests.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=pytest
https://ci.debian.net/data/autopkgtest/testing/s390x/s/skimage/46978110/log.gz
=================================== FAILURES
===================================
300s ______________________________ test_imread_handle
______________________________
300s 300s def test_imread_handle():
300s expected = np.load(fetch('data/chessboard_GRAY_U8.npy'))
300s with open(fetch('data/chessboard_GRAY_U16.tif'), 'rb') as fh:
300s img = imread(fh)
300s > assert img.dtype == np.uint16
300s E AssertionError: assert dtype('<u2') == <class 'numpy.uint16'>
300s E + where dtype('<u2') = array([[255, 255, 255, ..., 0,
0, 0],\n [255, 255, 255, ..., 0, 0, 0],\n [255, 255,
255, ..., 0, 0, 0],\n ...,\n [ 0, 0, 0, ..., 255,
255, 255],\n [ 0, 0, 0, ..., 255, 255, 255],\n [ 0,
0, 0, ..., 255, 255, 255]], dtype='<u2').dtype
300s E + and <class 'numpy.uint16'> = np.uint16
300s 300s
/usr/lib/python3/dist-packages/skimage/io/tests/test_tifffile.py:48:
AssertionError
300s =============================== warnings summary
===============================
300s filters/tests/test_unsharp_mask.py: 480 warnings
300s
/usr/lib/python3/dist-packages/skimage/filters/tests/test_unsharp_mask.py:26:
RuntimeWarning: invalid value encountered in cast
300s array = ((array + offset) * 128).astype(dtype)
300s 300s io/tests/test_pil.py::test_png_round_trip
300s io/tests/test_pil.py::test_imsave_filelike
300s
/usr/lib/python3/dist-packages/skimage/io/_plugins/pil_plugin.py:105:
DeprecationWarning: The binary mode of fromstring is deprecated, as it
behaves surprisingly on unicode inputs. Use frombuffer instead
300s frame = np.fromstring(frame.tobytes(), dtype)
300s 300s measure/tests/test_fit.py::test_ellipse_parameter_stability
300s /usr/lib/python3/dist-packages/skimage/measure/fit.py:526:
RuntimeWarning: divide by zero encountered in scalar divide
300s phi = 0.5 * np.arctan((2. * b) / (a - c))
300s 300s
transform/tests/test_pyramids.py::test_pyramid_dtype_support[pyramid_gaussian-uint8]
300s
transform/tests/test_pyramids.py::test_pyramid_dtype_support[pyramid_laplacian-uint8]
300s
/usr/lib/python3/dist-packages/skimage/transform/tests/test_pyramids.py:208:
RuntimeWarning: invalid value encountered in cast
300s img = np.random.randn(32, 8).astype(dtype)
300s 300s
../../../../usr/lib/python3/dist-packages/_pytest/cacheprovider.py:446
300s /usr/lib/python3/dist-packages/_pytest/cacheprovider.py:446:
PytestCacheWarning: could not create cache path
/usr/lib/python3/dist-packages/skimage/.pytest_cache/v/cache/nodeids:
[Errno 13] Permission denied:
'/usr/lib/python3/dist-packages/skimage/.pytest_cache'
300s config.cache.set("cache/nodeids", sorted(self.cached_nodeids))
300s 300s
../../../../usr/lib/python3/dist-packages/_pytest/cacheprovider.py:398
300s /usr/lib/python3/dist-packages/_pytest/cacheprovider.py:398:
PytestCacheWarning: could not create cache path
/usr/lib/python3/dist-packages/skimage/.pytest_cache/v/cache/lastfailed:
[Errno 13] Permission denied:
'/usr/lib/python3/dist-packages/skimage/.pytest_cache'
300s config.cache.set("cache/lastfailed", self.lastfailed)
300s 300s ../../../../usr/lib/python3/dist-packages/_pytest/stepwise.py:57
300s /usr/lib/python3/dist-packages/_pytest/stepwise.py:57:
PytestCacheWarning: could not create cache path
/usr/lib/python3/dist-packages/skimage/.pytest_cache/v/cache/stepwise:
[Errno 13] Permission denied:
'/usr/lib/python3/dist-packages/skimage/.pytest_cache'
300s session.config.cache.set(STEPWISE_CACHE_DIR, [])
300s 300s -- Docs:
https://docs.pytest.org/en/stable/how-to/capture-warnings.html
300s =========================== short test summary info
============================
300s FAILED
../../../../usr/lib/python3/dist-packages/skimage/io/tests/test_tifffile.py::test_imread_handle
300s = 1 failed, 7880 passed, 120 skipped, 91 xfailed, 27 xpassed, 488
warnings in 195.50s (0:03:15) =
300s autopkgtest [16:16:32]: test python3
OpenPGP_signature.asc
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: skimage
Source-Version: 0.24.0-1
Done: Ole Streicher <oleb...@debian.org>
We believe that the bug you reported is fixed in the latest version of
skimage, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1071...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Ole Streicher <oleb...@debian.org> (supplier of updated skimage package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 04 Jul 2024 10:06:11 +0200
Source: skimage
Architecture: source
Version: 0.24.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Ole Streicher <oleb...@debian.org>
Closes: 1070437 1071782 1074654
Changes:
skimage (0.24.0-1) unstable; urgency=medium
.
* New upstream version 0.24.0
* Rediff patches
* Push Standards-Version to 4.7.0. No changes needed
* Ignore data type test on test_imread_handle. Closes: #1071782
* Fix FTBFS on i386
* Remove setuptools hotfix (Closes: #1070437, #1074654)
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93fce3c38e35517415f643aeb52f030d05d8089e 22689976 skimage_0.24.0.orig.tar.gz
6b4d8caf7dd2c8d7bcbf6a1876ede5bc76ae981f 29208 skimage_0.24.0-1.debian.tar.xz
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Files:
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7bfca98ffb9bc8d3eef7ccaebad3456d 22689976 python optional
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skimage_0.24.0-1.debian.tar.xz
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