Your message dated Fri, 03 May 2024 16:50:50 +0000
with message-id <e1s2w7w-007lhe...@fasolo.debian.org>
and subject line Bug#1068960: fixed in python-pybedtools 0.10.0-1
has caused the Debian Bug report #1068960,
regarding python-pybedtools: FTBFS: testsuite error: 14 failed, 491 passed, 2
deselected, 3 xfailed
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1068960: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1068960
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-pybedtools
Version: 0.9.1-1
Severity: serious
Tags: ftbfs
Justification: fails to build from source (but built successfully in the past)
Dear maintainer,
python-pybedtools fails to build from source due to errors in the
testsuite. From my build log on amd64:
| =========================== short test summary info
============================
| FAILED pybedtools/test/test_gzip_support.py::test_gzipped_file_types_are_bed
| FAILED
pybedtools/test/test_gzip_support.py::test_gzipped_files_can_be_intersected
| FAILED
pybedtools/test/test_gzip_support.py::test_gzipped_files_are_iterable_as_normal
| FAILED
pybedtools/test/test_gzip_support.py::test_str_representation_of_gzipped_files_is_the_same_as_normal
| FAILED
pybedtools/test/test_gzip_support.py::test_head_of_gzipped_files_is_the_same_as_normal
| FAILED pybedtools/test/test_gzip_support.py::test_gzipped_output -
FileNotFou...
| FAILED
pybedtools/test/test_gzip_support.py::test_gzipping_is_default_when_extension_is_dot_gz
| FAILED
pybedtools/test/test_gzip_support.py::test_gzipping_can_be_turned_off_even_for_dot_gz
| FAILED pybedtools/test/test_issues.py::test_issue_169 - UnicodeDecodeError:
'...
| FAILED pybedtools/test/test_issues.py::test_issue_196 - OSError: Could not
op...
| FAILED pybedtools/test/test_issues.py::test_issue_180 - OSError: Could not
op...
| FAILED pybedtools/test/test_issues.py::test_issue_181 - OSError: Could not
op...
| FAILED pybedtools/test/test_issues.py::test_issue_258 - gzip.BadGzipFile:
Not...
| FAILED pybedtools/test/test_issues.py::test_issue_343 - UnicodeDecodeError:
'...
| =========== 14 failed, 491 passed, 2 deselected, 3 xfailed in 9.27s
============
| E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build; python3.11 -m pytest
-k "not test_chromsizes"
| dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12
3.11" returned exit code 13
| make: *** [debian/rules:30: binary] Error 25
| dpkg-buildpackage: error: debian/rules binary subprocess returned exit status
2
A full build log on riscv64 is available here:
https://buildd.debian.org/status/fetch.php?pkg=python-pybedtools&arch=riscv64&ver=0.9.1-1%2Bb2&stamp=1713040255&raw=0
Full build logs on amd64 and arm64 are also available on reproducible
builds:
https://tests.reproducible-builds.org/debian/rbuild/unstable/amd64/python-pybedtools_0.9.1-1.rbuild.log.gz
https://tests.reproducible-builds.org/debian/rbuild/unstable/arm64/python-pybedtools_0.9.1-1.rbuild.log.gz
Regards
Aurelien
--- End Message ---
--- Begin Message ---
Source: python-pybedtools
Source-Version: 0.10.0-1
Done: Michael R. Crusoe <cru...@debian.org>
We believe that the bug you reported is fixed in the latest version of
python-pybedtools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1068...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated python-pybedtools
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 03 May 2024 17:43:13 +0200
Source: python-pybedtools
Architecture: source
Version: 0.10.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 1068960
Changes:
python-pybedtools (0.10.0-1) unstable; urgency=medium
.
* New upstream version. Closes: #1068960
* Refreshed patches.
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