Bug#1069843: marked as done (zarr: FTBFS: failing tests)

[Debian Bug Tracking System]

Your message dated Fri, 03 May 2024 15:32:22 +0000
with message-id <e1s2uta-007xga...@fasolo.debian.org>
and subject line Bug#1069843: fixed in zarr 2.17.2+ds-2
has caused the Debian Bug report #1069843,
regarding zarr: FTBFS: failing tests
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1069843: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1069843
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Package: src:zarr
Version: 2.17.2+ds-1
Severity: serious
Tags: ftbfs

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules binary
dh binary --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
   dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" 
module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel 
--outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_zarr
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/zarr
copying zarr/hierarchy.py -> build/lib/zarr
copying zarr/__init__.py -> build/lib/zarr
copying zarr/storage.py -> build/lib/zarr
copying zarr/meta_v1.py -> build/lib/zarr
copying zarr/creation.py -> build/lib/zarr
copying zarr/types.py -> build/lib/zarr
copying zarr/util.py -> build/lib/zarr
copying zarr/core.py -> build/lib/zarr
copying zarr/indexing.py -> build/lib/zarr
copying zarr/codecs.py -> build/lib/zarr
copying zarr/convenience.py -> build/lib/zarr
copying zarr/errors.py -> build/lib/zarr
copying zarr/version.py -> build/lib/zarr
copying zarr/attrs.py -> build/lib/zarr
copying zarr/n5.py -> build/lib/zarr
copying zarr/context.py -> build/lib/zarr
copying zarr/sync.py -> build/lib/zarr
copying zarr/meta.py -> build/lib/zarr
creating build/lib/zarr/_storage
copying zarr/_storage/__init__.py -> build/lib/zarr/_storage
copying zarr/_storage/absstore.py -> build/lib/zarr/_storage
copying zarr/_storage/v3.py -> build/lib/zarr/_storage
copying zarr/_storage/store.py -> build/lib/zarr/_storage
copying zarr/_storage/v3_storage_transformers.py -> build/lib/zarr/_storage
creating build/lib/zarr/tests
copying zarr/tests/test_sync.py -> build/lib/zarr/tests
copying zarr/tests/__init__.py -> build/lib/zarr/tests
copying zarr/tests/test_meta.py -> build/lib/zarr/tests
copying zarr/tests/test_core.py -> build/lib/zarr/tests
copying zarr/tests/test_dim_separator.py -> build/lib/zarr/tests
copying zarr/tests/test_storage_v3.py -> build/lib/zarr/tests
copying zarr/tests/test_convenience.py -> build/lib/zarr/tests
copying zarr/tests/test_n5.py -> build/lib/zarr/tests
copying zarr/tests/test_storage.py -> build/lib/zarr/tests
copying zarr/tests/test_hierarchy.py -> build/lib/zarr/tests
copying zarr/tests/util.py -> build/lib/zarr/tests
copying zarr/tests/test_attrs.py -> build/lib/zarr/tests
copying zarr/tests/test_creation.py -> build/lib/zarr/tests
copying zarr/tests/conftest.py -> build/lib/zarr/tests
copying zarr/tests/test_info.py -> build/lib/zarr/tests
copying zarr/tests/test_filters.py -> build/lib/zarr/tests
copying zarr/tests/test_util.py -> build/lib/zarr/tests
copying zarr/tests/test_indexing.py -> build/lib/zarr/tests
copying zarr/tests/test_meta_array.py -> build/lib/zarr/tests
running egg_info
creating zarr.egg-info
writing zarr.egg-info/PKG-INFO
writing dependency_links to zarr.egg-info/dependency_links.txt
writing requirements to zarr.egg-info/requires.txt
writing top-level names to zarr.egg-info/top_level.txt
writing manifest file 'zarr.egg-info/SOURCES.txt'
reading manifest file 'zarr.egg-info/SOURCES.txt'
adding license file 'LICENSE.txt'
writing manifest file 'zarr.egg-info/SOURCES.txt'
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/hierarchy.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/__init__.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/storage.py -> build/bdist.linux-x86_64/wheel/zarr
creating build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_sync.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/__init__.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_meta.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_core.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_dim_separator.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_storage_v3.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_convenience.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_n5.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_storage.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_hierarchy.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/util.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_attrs.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_creation.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/conftest.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_info.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_filters.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_util.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_indexing.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_meta_array.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/meta_v1.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/creation.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/types.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/util.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/core.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/indexing.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/codecs.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/convenience.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/errors.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/version.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/attrs.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/n5.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/context.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/sync.py -> build/bdist.linux-x86_64/wheel/zarr
creating build/bdist.linux-x86_64/wheel/zarr/_storage
copying build/lib/zarr/_storage/__init__.py -> 
build/bdist.linux-x86_64/wheel/zarr/_storage
copying build/lib/zarr/_storage/absstore.py -> 
build/bdist.linux-x86_64/wheel/zarr/_storage
copying build/lib/zarr/_storage/v3.py -> 
build/bdist.linux-x86_64/wheel/zarr/_storage
copying build/lib/zarr/_storage/store.py -> 
build/bdist.linux-x86_64/wheel/zarr/_storage
copying build/lib/zarr/_storage/v3_storage_transformers.py -> 
build/bdist.linux-x86_64/wheel/zarr/_storage
copying build/lib/zarr/meta.py -> build/bdist.linux-x86_64/wheel/zarr
running install_egg_info
Copying zarr.egg-info to build/bdist.linux-x86_64/wheel/zarr-2.17.2.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/zarr-2.17.2.dist-info/WHEEL
creating 
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_zarr/.tmp-mlcyrmch/zarr-2.17.2-py3-none-any.whl'
 and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'zarr/__init__.py'
adding 'zarr/attrs.py'
adding 'zarr/codecs.py'
adding 'zarr/context.py'
adding 'zarr/convenience.py'
adding 'zarr/core.py'
adding 'zarr/creation.py'
adding 'zarr/errors.py'
adding 'zarr/hierarchy.py'
adding 'zarr/indexing.py'
adding 'zarr/meta.py'
adding 'zarr/meta_v1.py'
adding 'zarr/n5.py'
adding 'zarr/storage.py'
adding 'zarr/sync.py'
adding 'zarr/types.py'
adding 'zarr/util.py'
adding 'zarr/version.py'
adding 'zarr/_storage/__init__.py'
adding 'zarr/_storage/absstore.py'
adding 'zarr/_storage/store.py'
adding 'zarr/_storage/v3.py'
adding 'zarr/_storage/v3_storage_transformers.py'
adding 'zarr/tests/__init__.py'
adding 'zarr/tests/conftest.py'
adding 'zarr/tests/test_attrs.py'
adding 'zarr/tests/test_convenience.py'
adding 'zarr/tests/test_core.py'
adding 'zarr/tests/test_creation.py'
adding 'zarr/tests/test_dim_separator.py'
adding 'zarr/tests/test_filters.py'
adding 'zarr/tests/test_hierarchy.py'
adding 'zarr/tests/test_indexing.py'
adding 'zarr/tests/test_info.py'
adding 'zarr/tests/test_meta.py'
adding 'zarr/tests/test_meta_array.py'
adding 'zarr/tests/test_n5.py'
adding 'zarr/tests/test_storage.py'
adding 'zarr/tests/test_storage_v3.py'
adding 'zarr/tests/test_sync.py'
adding 'zarr/tests/test_util.py'
adding 'zarr/tests/util.py'
adding 'zarr-2.17.2.dist-info/LICENSE.txt'
adding 'zarr-2.17.2.dist-info/METADATA'
adding 'zarr-2.17.2.dist-info/WHEEL'
adding 'zarr-2.17.2.dist-info/top_level.txt'
adding 'zarr-2.17.2.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built zarr-2.17.2-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with 
"installer" module
I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" 
module
I: pybuild base:311: python3.11 -m build --skip-dependency-check --no-isolation --wheel 
--outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr
* Building wheel...
running bdist_wheel
running build
running build_py
running egg_info
writing zarr.egg-info/PKG-INFO
writing dependency_links to zarr.egg-info/dependency_links.txt
writing requirements to zarr.egg-info/requires.txt
writing top-level names to zarr.egg-info/top_level.txt
reading manifest file 'zarr.egg-info/SOURCES.txt'
adding license file 'LICENSE.txt'
writing manifest file 'zarr.egg-info/SOURCES.txt'
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/hierarchy.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/__init__.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/storage.py -> build/bdist.linux-x86_64/wheel/zarr
creating build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_sync.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/__init__.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_meta.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_core.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_dim_separator.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_storage_v3.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_convenience.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_n5.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_storage.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_hierarchy.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/util.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_attrs.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_creation.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/conftest.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_info.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_filters.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_util.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_indexing.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/tests/test_meta_array.py -> 
build/bdist.linux-x86_64/wheel/zarr/tests
copying build/lib/zarr/meta_v1.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/creation.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/types.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/util.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/core.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/indexing.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/codecs.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/convenience.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/errors.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/version.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/attrs.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/n5.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/context.py -> build/bdist.linux-x86_64/wheel/zarr
copying build/lib/zarr/sync.py -> build/bdist.linux-x86_64/wheel/zarr
creating build/bdist.linux-x86_64/wheel/zarr/_storage
copying build/lib/zarr/_storage/__init__.py -> 
build/bdist.linux-x86_64/wheel/zarr/_storage
copying build/lib/zarr/_storage/absstore.py -> 
build/bdist.linux-x86_64/wheel/zarr/_storage
copying build/lib/zarr/_storage/v3.py -> 
build/bdist.linux-x86_64/wheel/zarr/_storage
copying build/lib/zarr/_storage/store.py -> 
build/bdist.linux-x86_64/wheel/zarr/_storage
copying build/lib/zarr/_storage/v3_storage_transformers.py -> 
build/bdist.linux-x86_64/wheel/zarr/_storage
copying build/lib/zarr/meta.py -> build/bdist.linux-x86_64/wheel/zarr
running install_egg_info
Copying zarr.egg-info to build/bdist.linux-x86_64/wheel/zarr-2.17.2.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/zarr-2.17.2.dist-info/WHEEL
creating 
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr/.tmp-kh5frrdh/zarr-2.17.2-py3-none-any.whl'
 and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'zarr/__init__.py'
adding 'zarr/attrs.py'
adding 'zarr/codecs.py'
adding 'zarr/context.py'
adding 'zarr/convenience.py'
adding 'zarr/core.py'
adding 'zarr/creation.py'
adding 'zarr/errors.py'
adding 'zarr/hierarchy.py'
adding 'zarr/indexing.py'
adding 'zarr/meta.py'
adding 'zarr/meta_v1.py'
adding 'zarr/n5.py'
adding 'zarr/storage.py'
adding 'zarr/sync.py'
adding 'zarr/types.py'
adding 'zarr/util.py'
adding 'zarr/version.py'
adding 'zarr/_storage/__init__.py'
adding 'zarr/_storage/absstore.py'
adding 'zarr/_storage/store.py'
adding 'zarr/_storage/v3.py'
adding 'zarr/_storage/v3_storage_transformers.py'
adding 'zarr/tests/__init__.py'
adding 'zarr/tests/conftest.py'
adding 'zarr/tests/test_attrs.py'
adding 'zarr/tests/test_convenience.py'
adding 'zarr/tests/test_core.py'
adding 'zarr/tests/test_creation.py'
adding 'zarr/tests/test_dim_separator.py'
adding 'zarr/tests/test_filters.py'
adding 'zarr/tests/test_hierarchy.py'
adding 'zarr/tests/test_indexing.py'
adding 'zarr/tests/test_info.py'
adding 'zarr/tests/test_meta.py'
adding 'zarr/tests/test_meta_array.py'
adding 'zarr/tests/test_n5.py'
adding 'zarr/tests/test_storage.py'
adding 'zarr/tests/test_storage_v3.py'
adding 'zarr/tests/test_sync.py'
adding 'zarr/tests/test_util.py'
adding 'zarr/tests/util.py'
adding 'zarr-2.17.2.dist-info/LICENSE.txt'
adding 'zarr-2.17.2.dist-info/METADATA'
adding 'zarr-2.17.2.dist-info/WHEEL'
adding 'zarr-2.17.2.dist-info/top_level.txt'
adding 'zarr-2.17.2.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built zarr-2.17.2-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with 
"installer" module
   debian/rules execute_after_dh_auto_build-indep
make[1]: Entering directory '/<<PKGBUILDDIR>>'
I: pybuild base:311: echo /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr/build
cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr/build && \
PYTHONPATH=. \
LC_ALL=C.UTF-8 LANGUAGE=C.UTF-8 \
sphinx-build -N -E -T -b html /<<PKGBUILDDIR>>/docs 
/<<PKGBUILDDIR>>/.pybuild/docs/html
Running Sphinx v7.2.6
making output directory... done
[autosummary] generating autosummary for: acknowledgments.rst, api.rst, 
api/attrs.rst, api/codecs.rst, api/convenience.rst, api/core.rst, 
api/creation.rst, api/hierarchy.rst, api/n5.rst, api/storage.rst, ..., 
getting_started.rst, index.rst, installation.rst, license.rst, release.rst, 
spec.rst, spec/v1.rst, spec/v2.rst, spec/v3.rst, tutorial.rst
loading intersphinx inventory from https://docs.python.org/objects.inv...
loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv...
loading intersphinx inventory from 
https://numcodecs.readthedocs.io/en/stable/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to 
<class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='numpy.org', 
port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by 
ProxyError('Cannot connect to proxy.', 
NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4a5c9c3690>: 
Failed to establish a new connection: [Errno 111] Connection refused')))
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://docs.python.org/objects.inv' not fetchable due to <class 
'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='docs.python.org', 
port=443): Max retries exceeded with url: /objects.inv (Caused by ProxyError('Cannot 
connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 
0x7f4a5ddc42d0>: Failed to establish a new connection: [Errno 111] Connection refused')))
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://numcodecs.readthedocs.io/en/stable/objects.inv' not 
fetchable due to <class 'requests.exceptions.ProxyError'>: 
HTTPSConnectionPool(host='numcodecs.readthedocs.io', port=443): Max retries exceeded with 
url: /en/stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', 
NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4a5f928810>: 
Failed to establish a new connection: [Errno 111] Connection refused')))
[automodsumm] api/core.rst: found 1 automodsumm entries to generate
building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 23 source files that are out of date
updating environment: [new config] 24 added, 0 changed, 0 removed
reading sources... [  4%] _autoapi/zarr.core.Array
reading sources... [  8%] acknowledgments
reading sources... [ 12%] api
reading sources... [ 17%] api/attrs
reading sources... [ 21%] api/codecs
reading sources... [ 25%] api/convenience
reading sources... [ 29%] api/core
reading sources... [ 33%] api/creation
reading sources... [ 38%] api/hierarchy
reading sources... [ 42%] api/n5
reading sources... [ 46%] api/storage
reading sources... [ 50%] api/sync
reading sources... [ 54%] api/v3
reading sources... [ 58%] contributing
reading sources... [ 62%] getting_started
reading sources... [ 67%] index
reading sources... [ 71%] installation
reading sources... [ 75%] license
reading sources... [ 79%] release
reading sources... [ 83%] spec
reading sources... [ 88%] spec/v1
reading sources... [ 92%] spec/v2
reading sources... [ 96%] spec/v3
reading sources... [100%] tutorial

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generating indices... genindex py-modindex done
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build succeeded, 3 warnings.

The HTML pages are in ../../docs/html.
rm -rf /<<PKGBUILDDIR>>/.pybuild/docs/html/.doctrees
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_zarr/build; python3.12 -m 
pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not 
[static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not 
test_meta_prefix_6853" --pyargs zarr
============================= test session starts ==============================
platform linux -- Python 3.12.3, pytest-8.1.1, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_zarr/build
configfile: pyproject.toml
plugins: timeout-2.3.1, doctestplus-1.2.1
collected 5166 items / 763 deselected / 4403 selected

zarr/tests/test_attrs.py ..................                              [  0%]
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ssssss..ssssss..ssssss                                                   [ 63%]
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zarr/tests/test_util.py ..................                               [100%]

=================================== FAILURES ===================================
___________________________ TestFSStore.test_complex ___________________________

self = <zarr.tests.test_storage.TestFSStore object at 0x7f335c3ba8d0>

    def test_complex(self):
        path1 = tempfile.mkdtemp()
        path2 = tempfile.mkdtemp()
        store = self.create_store(
            path="simplecache::file://" + path1,
            simplecache={"same_names": True, "cache_storage": path2},
        )
        assert not store
        assert not os.listdir(path1)
        assert not os.listdir(path2)
        store[self.root + "foo"] = b"hello"
        assert "foo" in os.listdir(str(path1) + "/" + self.root)
        assert self.root + "foo" in store

      assert not os.listdir(str(path2))

E       AssertionError: assert not ['foo']
E        +  where ['foo'] = <built-in function listdir>('/tmp/tmpmlzejl8z')
E        +    where <built-in function listdir> = os.listdir
E        +    and   '/tmp/tmpmlzejl8z' = str('/tmp/tmpmlzejl8z')

zarr/tests/test_storage.py:1155: AssertionError
__________________________ TestN5FSStore.test_complex __________________________

self = <zarr.tests.test_storage.TestN5FSStore object at 0x7f335c0e0920>

    def test_complex(self):
        path1 = tempfile.mkdtemp()
        path2 = tempfile.mkdtemp()
        store = self.create_store(
            path="simplecache::file://" + path1,
            simplecache={"same_names": True, "cache_storage": path2},
        )
        assert not store
        assert not os.listdir(path1)
        assert not os.listdir(path2)
        store[self.root + "foo"] = b"hello"
        assert "foo" in os.listdir(str(path1) + "/" + self.root)
        assert self.root + "foo" in store

      assert not os.listdir(str(path2))

E       AssertionError: assert not ['foo']
E        +  where ['foo'] = <built-in function listdir>('/tmp/tmpg09d1c03')
E        +    where <built-in function listdir> = os.listdir
E        +    and   '/tmp/tmpg09d1c03' = str('/tmp/tmpg09d1c03')

zarr/tests/test_storage.py:1155: AssertionError
=============================== warnings summary ===============================
zarr/tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray
  /usr/lib/python3.12/zipfile/__init__.py:1607: UserWarning: Duplicate name: 
'foo'
    return self._open_to_write(zinfo, force_zip64=force_zip64)

zarr/tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem
zarr/tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem
zarr/tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append
zarr/tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append
zarr/tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group
zarr/tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group
zarr/tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group
zarr/tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group
  /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: 
This process (pid=287649) is multi-threaded, use of fork() may lead to 
deadlocks in the child.
    self.pid = os.fork()

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
============================= slowest 10 durations =============================
4.33s call     zarr/tests/test_indexing.py::test_set_orthogonal_selection_3d
1.54s call     zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_islice
1.53s call     zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_iter
1.52s call     zarr/tests/test_storage.py::test_format_compatibility
1.36s call     zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d
1.10s call     
zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_array_order
1.09s call     zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d
1.08s call     
zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis
0.94s call     
zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont
0.84s call     zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_dtypes
=========================== short test summary info ============================
FAILED zarr/tests/test_storage.py::TestFSStore::test_complex - AssertionError...
FAILED zarr/tests/test_storage.py::TestN5FSStore::test_complex - AssertionErr...
= 2 failed, 2222 passed, 2175 skipped, 763 deselected, 4 xfailed, 9 warnings in 
51.81s =
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_zarr/build; python3.12 -m pytest -k "not 
test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not 
[static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853" --pyargs zarr
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr/build; python3.11 -m 
pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not 
[static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not 
test_meta_prefix_6853" --pyargs zarr
============================= test session starts ==============================
platform linux -- Python 3.11.9, pytest-8.1.1, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr/build
configfile: pyproject.toml
plugins: timeout-2.3.1, doctestplus-1.2.1
collected 5166 items / 763 deselected / 4403 selected

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zarr/tests/test_convenience.py .....ss...................ssssssss.s..... [  1%]
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...........xx......                                                      [ 61%]
zarr/tests/test_info.py ..                                               [ 61%]
zarr/tests/test_meta.py .........................                        [ 62%]
zarr/tests/test_meta_array.py .sss.sss.sss.sss.sss.sss.sss.sss..ssssss.. [ 63%]
ssssss..ssssss..ssssss                                                   [ 63%]
zarr/tests/test_n5.py .....                                              [ 63%]
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................                                                         [ 99%]
zarr/tests/test_util.py ..................                               [100%]

=================================== FAILURES ===================================
___________________________ TestFSStore.test_complex ___________________________

self = <zarr.tests.test_storage.TestFSStore object at 0x7ffbc36aea90>

    def test_complex(self):
        path1 = tempfile.mkdtemp()
        path2 = tempfile.mkdtemp()
        store = self.create_store(
            path="simplecache::file://" + path1,
            simplecache={"same_names": True, "cache_storage": path2},
        )
        assert not store
        assert not os.listdir(path1)
        assert not os.listdir(path2)
        store[self.root + "foo"] = b"hello"
        assert "foo" in os.listdir(str(path1) + "/" + self.root)
        assert self.root + "foo" in store

      assert not os.listdir(str(path2))

E       AssertionError: assert not ['foo']
E        +  where ['foo'] = <built-in function listdir>('/tmp/tmpb57pytp0')
E        +    where <built-in function listdir> = os.listdir
E        +    and   '/tmp/tmpb57pytp0' = str('/tmp/tmpb57pytp0')

zarr/tests/test_storage.py:1155: AssertionError
__________________________ TestN5FSStore.test_complex __________________________

self = <zarr.tests.test_storage.TestN5FSStore object at 0x7ffbc355d150>

    def test_complex(self):
        path1 = tempfile.mkdtemp()
        path2 = tempfile.mkdtemp()
        store = self.create_store(
            path="simplecache::file://" + path1,
            simplecache={"same_names": True, "cache_storage": path2},
        )
        assert not store
        assert not os.listdir(path1)
        assert not os.listdir(path2)
        store[self.root + "foo"] = b"hello"
        assert "foo" in os.listdir(str(path1) + "/" + self.root)
        assert self.root + "foo" in store

      assert not os.listdir(str(path2))

E       AssertionError: assert not ['foo']
E        +  where ['foo'] = <built-in function listdir>('/tmp/tmpjnj_wxks')
E        +    where <built-in function listdir> = os.listdir
E        +    and   '/tmp/tmpjnj_wxks' = str('/tmp/tmpjnj_wxks')

zarr/tests/test_storage.py:1155: AssertionError
=============================== warnings summary ===============================
zarr/tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray
  /usr/lib/python3.11/zipfile.py:1566: UserWarning: Duplicate name: 'foo'
    return self._open_to_write(zinfo, force_zip64=force_zip64)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
============================= slowest 10 durations =============================
4.53s call     zarr/tests/test_indexing.py::test_set_orthogonal_selection_3d
1.63s call     zarr/tests/test_storage.py::test_format_compatibility
1.63s call     zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_iter
1.45s call     zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_islice
1.13s call     zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d
1.09s call     
zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_array_order
1.08s call     
zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis
1.08s call     zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d
0.90s call     
zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont
0.75s call     zarr/tests/test_indexing.py::test_set_orthogonal_selection_2d
=========================== short test summary info ============================
FAILED zarr/tests/test_storage.py::TestFSStore::test_complex - AssertionError...
FAILED zarr/tests/test_storage.py::TestN5FSStore::test_complex - AssertionErr...
= 2 failed, 2222 passed, 2175 skipped, 763 deselected, 4 xfailed, 1 warning in 
52.19s =
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr/build; python3.11 -m pytest -k "not 
test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not 
[static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853" --pyargs zarr
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 
3.11" returned exit code 13
make: *** [debian/rules:27: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202404/

About the archive rebuild: The build was made on virtual machines
of type m6a.large from AWS, using sbuild and a reduced chroot
with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.

Thanks.

--- End Message ---

--- Begin Message ---

Source: zarr
Source-Version: 2.17.2+ds-2
Done: Antonio Valentino <antonio.valent...@tiscali.it>

We believe that the bug you reported is fixed in the latest version of
zarr, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1069...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Antonio Valentino <antonio.valent...@tiscali.it> (supplier of updated zarr 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 01 May 2024 16:18:43 +0000
Source: zarr
Architecture: source
Version: 2.17.2+ds-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Antonio Valentino <antonio.valent...@tiscali.it>
Closes: 1069843
Changes:
 zarr (2.17.2+ds-2) unstable; urgency=medium
 .
   * debian/rules:
     - Skip broken test. The issue seems to be due to incorrect
       assumptions in the test code and triggered by a change in
       the behavior of "simplecache" in python3-fsspec v2024.3.x.
       The issue has bee reported upstream:
       https://github.com/zarr-developers/zarr-python/issues/1819.
       Closes: #1069843.
Checksums-Sha1:
 1dcdc83fbb72f9e2253955eacc2ed10c2160804d 2633 zarr_2.17.2+ds-2.dsc
 d40b7a8a1dcd6883f1f3cfbfca91ab3e9ceea3b6 5568 zarr_2.17.2+ds-2.debian.tar.xz
 8fca17a31d952f14fc4be8fbefbed4b3c5aade93 9407 zarr_2.17.2+ds-2_source.buildinfo
Checksums-Sha256:
 8d0faaaef13c45d42b084eaddba9df692549164cccf11825db0e266ddbe214c2 2633 
zarr_2.17.2+ds-2.dsc
 ad696f815ca98a12ebcc2e89766dbb6fad5b364c9c8f5d1f6773c7dbeb66e6f9 5568 
zarr_2.17.2+ds-2.debian.tar.xz
 7fd86933a2612513f347fe9b9afffa48f342ed6fc3e2ad20093c980e683c05a3 9407 
zarr_2.17.2+ds-2_source.buildinfo
Files:
 a3288fc0b7dd1e91ee2ef67c8d6bb318 2633 python optional zarr_2.17.2+ds-2.dsc
 7641d00bc41095ad1a56d49aee7e6bf4 5568 python optional 
zarr_2.17.2+ds-2.debian.tar.xz
 a6ac989419fbf338fa3bb26822957853 9407 python optional 
zarr_2.17.2+ds-2_source.buildinfo

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--- End Message ---