Your message dated Fri, 12 Apr 2024 11:21:17 +0000
with message-id <e1rvey5-00fnqg...@fasolo.debian.org>
and subject line Bug#1067233: fixed in python-pomegranate 0.14.8-5
has caused the Debian Bug report #1067233,
regarding python-pomegranate: autopkgtest regression with NumPy 1.26
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1067233: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1067233
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-pomegranate
Version: 0.14.8-4
Severity: serious
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Dear maintainer,
your package has an autopkgtest regression with NumPy 1.26.
Hopefully relevent excerpt from the test log:
52s > ???
52s E ValueError: The truth value of an array with more than one element is
ambiguous. Use a.any() or a.all()
52s
52s pomegranate/kmeans.pyx:232: ValueError
52s =============================== warnings summary
===============================
52s ../../../../usr/lib/python3/dist-packages/dateutil/tz/tz.py:37
52s /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning:
datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in
a future version. Use timezone-aware objects to represent datetimes in UTC:
datetime.datetime.fromtimestamp(timestamp, datetime.UTC).
52s EPOCH = datetime.datetime.utcfromtimestamp(0)
52s
52s tests/test_custom_distributions.py: 29600 warnings
52s tests/test_hmm.py: 375 warnings
52s /usr/lib/python3/dist-packages/joblib/parallel.py:1792:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s res = func(*args, **kwargs)
52s
52s tests/test_custom_distributions.py: 40 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:223:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 400 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:232:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 200 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:345:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 200 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:359:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.predict(X), model2.predict(X))
52s
52s tests/test_custom_distributions.py: 200 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:373:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.predict_proba(X),
model2.predict_proba(X))
52s
52s tests/test_custom_distributions.py: 200 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:387:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.predict_log_proba(X),
model2.predict_log_proba(X))
52s
52s tests/test_custom_distributions.py: 200 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:402:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 2000 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:411:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 40 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:493:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 400 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:504:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 200 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:620:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 200 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:634:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.predict(X), model2.predict(X))
52s
52s tests/test_custom_distributions.py: 200 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:648:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.predict_proba(X),
model2.predict_proba(X))
52s
52s tests/test_custom_distributions.py: 200 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:662:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.predict_log_proba(X),
model2.predict_log_proba(X))
52s
52s tests/test_custom_distributions.py: 200 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:679:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 2000 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:690:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 10 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:700:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 30 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:705:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_equal(model1.predict(X), model2.predict(X))
52s
52s tests/test_custom_distributions.py: 30 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:710:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.predict_proba(X),
model2.predict_proba(X))
52s
52s tests/test_custom_distributions.py: 30 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:715:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.predict_log_proba(X),
model2.predict_log_proba(X))
52s
52s tests/test_custom_distributions.py: 10 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:724:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py::test_custom_normal_hmm_from_samples
52s tests/test_custom_distributions.py::test_custom_normal_hmm_from_samples
52s tests/test_custom_distributions.py::test_custom_normal_hmm_from_samples
52s tests/test_custom_distributions.py::test_custom_normal_hmm_from_samples
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:733:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 50 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:787:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 150 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:792:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.predict(X), model2.predict(X))
52s
52s tests/test_custom_distributions.py: 150 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:797:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.predict_proba(X),
model2.predict_proba(X))
52s
52s tests/test_custom_distributions.py: 150 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:802:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.predict_log_proba(X),
model2.predict_log_proba(X))
52s
52s tests/test_custom_distributions.py: 30 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:811:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s tests/test_custom_distributions.py: 20 warnings
52s
/tmp/autopkgtest-lxc.qczb1z7m/downtmp/autopkgtest_tmp/tests/test_custom_distributions.py:820:
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is
deprecated, and will error in future. Ensure you extract a single element from
your array before performing this operation. (Deprecated NumPy 1.25.)
52s assert_array_almost_equal(model1.log_probability(X),
model2.log_probability(X))
52s
52s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
52s =========================== short test summary info
============================
52s ERROR tests/test_kmeans.py::test_kmeans_from_samples - ValueError: The
truth ...
52s ERROR tests/test_kmeans.py::test_kmeans_from_samples_parallel -
ValueError: T...
52s ERROR tests/test_kmeans.py::test_kmeans_predict - ValueError: The truth
value...
52s ERROR tests/test_kmeans.py::test_kmeans_predict_parallel - ValueError: The
tr...
52s ERROR tests/test_kmeans.py::test_kmeans_predict_large - ValueError: The
truth...
52s ERROR tests/test_kmeans.py::test_kmeans_predict_large_parallel -
ValueError: ...
52s ERROR tests/test_kmeans.py::test_kmeans_fit - ValueError: The truth value
of ...
52s ERROR tests/test_kmeans.py::test_kmeans_fit_parallel - ValueError: The
truth ...
52s ERROR tests/test_kmeans.py::test_kmeans_multiple_init - ValueError: The
truth...
52s ERROR tests/test_kmeans.py::test_kmeans_ooc_from_samples - ValueError: The
tr...
52s ERROR tests/test_kmeans.py::test_kmeans_ooc_fit - ValueError: The truth
value...
52s ERROR tests/test_kmeans.py::test_kmeans_minibatch_from_samples -
ValueError: ...
52s ERROR tests/test_kmeans.py::test_kmeans_minibatch_fit - ValueError: The
truth...
52s ERROR tests/test_kmeans.py::test_kmeans_nan_from_samples - ValueError: The
tr...
52s ERROR tests/test_kmeans.py::test_kmeans_nan_from_samples_parallel -
ValueErro...
52s ERROR tests/test_kmeans.py::test_kmeans_nan_fit - ValueError: The truth
value...
52s ERROR tests/test_kmeans.py::test_kmeans_nan_fit_parallel - ValueError: The
tr...
52s ERROR tests/test_kmeans.py::test_kmeans_nan_fit_large - ValueError: The
truth...
52s ERROR tests/test_kmeans.py::test_kmeans_nan_fit_large_parallel -
ValueError: ...
52s ERROR tests/test_kmeans.py::test_kmeans_nan_predict - ValueError: The
truth v...
52s ERROR tests/test_kmeans.py::test_kmeans_nan_predict_parallel - ValueError:
Th...
52s ERROR tests/test_kmeans.py::test_kmeans_nan_large_predict - ValueError:
The t...
52s ERROR tests/test_kmeans.py::test_kmeans_nan_large_predict_parallel -
ValueErr...
52s ERROR tests/test_kmeans.py::test_kmeans_nan_multiple_init - ValueError:
The t...
52s ERROR tests/test_kmeans.py::test_kmeans_ooc_nan_from_samples - ValueError:
Th...
52s ERROR tests/test_kmeans.py::test_kmeans_ooc_nan_fit - ValueError: The
truth v...
52s ERROR tests/test_kmeans.py::test_kmeans_minibatch_nan_from_samples -
ValueErr...
52s ERROR tests/test_kmeans.py::test_kmeans_minibatch_nan_fit - ValueError:
The t...
52s =============== 570 passed, 37520 warnings, 28 errors in 12.06s
================
Cheers
Timo
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--- End Message ---
--- Begin Message ---
Source: python-pomegranate
Source-Version: 0.14.8-5
Done: Michael R. Crusoe <cru...@debian.org>
We believe that the bug you reported is fixed in the latest version of
python-pomegranate, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1067...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated python-pomegranate
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 12 Apr 2024 12:50:07 +0300
Source: python-pomegranate
Architecture: source
Version: 0.14.8-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Team <team+pyt...@tracker.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 1067233 1067294
Changes:
python-pomegranate (0.14.8-5) unstable; urgency=medium
.
* Add patch from Graham Inggs to fix compat with NumPy 1.26+, thank
you Graham! Closes: #1067233, #1067294
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