Your message dated Thu, 29 Feb 2024 16:50:46 +0000
with message-id <e1rfjcm-00c24u...@fasolo.debian.org>
and subject line Bug#1062891: fixed in seqtools 4.44.1+dfsg-7.1
has caused the Debian Bug report #1062891,
regarding seqtools: NMU diff for 64-bit time_t transition
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1062891: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1062891
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: seqtools
Version: 4.44.1+dfsg-7
Severity: serious
Tags: patch pending sid trixie
Justification: library ABI skew on upgrade
User: debian-...@lists.debian.org
Usertags: time-t
NOTICE: these changes must not be uploaded to unstable yet!
Dear maintainer,
As part of the 64-bit time_t transition required to support 32-bit
architectures in 2038 and beyond
(https://wiki.debian.org/ReleaseGoals/64bit-time), we have identified
seqtools as a source package shipping runtime libraries whose ABI
either is affected by the change in size of time_t, or could not be
analyzed via abi-compliance-checker (and therefore to be on the safe
side we assume is affected).
To ensure that inconsistent combinations of libraries with their
reverse-dependencies are never installed together, it is necessary to
have a library transition, which is most easily done by renaming the
runtime library package.
Since turning on 64-bit time_t is being handled centrally through a change
to the default dpkg-buildflags (https://bugs.debian.org/1037136), it is
important that libraries affected by this ABI change all be uploaded close
together in time. Therefore I have prepared a 0-day NMU for seqtools
which will initially be uploaded to experimental if possible, then to
unstable after packages have cleared binary NEW.
Please find the patch for this NMU attached.
If you have any concerns about this patch, please reach out ASAP. Although
this package will be uploaded to experimental immediately, there will be a
period of several days before we begin uploads to unstable; so if information
becomes available that your package should not be included in the transition,
there is time for us to amend the planned uploads.
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 6.5.0-5-amd64 (SMP w/32 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE,
TAINT_UNSIGNED_MODULE
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: unable to detect
diff -Nru seqtools-4.44.1+dfsg/debian/changelog
seqtools-4.44.1+dfsg/debian/changelog
--- seqtools-4.44.1+dfsg/debian/changelog 2021-11-17 07:47:38.000000000
+0000
+++ seqtools-4.44.1+dfsg/debian/changelog 2024-02-03 21:32:02.000000000
+0000
@@ -1,3 +1,10 @@
+seqtools (4.44.1+dfsg-7.1) experimental; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition.
+
+ -- Sergio Durigan Junior <sergi...@debian.org> Sat, 03 Feb 2024 21:32:02
+0000
+
seqtools (4.44.1+dfsg-7) unstable; urgency=medium
* Versioned Build-Depends: d-shlibs (>= 0.80)
diff -Nru seqtools-4.44.1+dfsg/debian/control
seqtools-4.44.1+dfsg/debian/control
--- seqtools-4.44.1+dfsg/debian/control 2021-11-17 07:47:38.000000000 +0000
+++ seqtools-4.44.1+dfsg/debian/control 2024-02-03 21:32:02.000000000 +0000
@@ -8,14 +8,17 @@
libsqlite3-dev,
libcurl4-openssl-dev | libcurl4-dev,
libjsoncpp-dev,
- d-shlibs
+ d-shlibs (>= 0.106),
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/seqtools
Vcs-Git: https://salsa.debian.org/med-team/seqtools.git
Homepage: https://www.sanger.ac.uk/science/tools/seqtools
Rules-Requires-Root: no
-Package: libgbtools0
+Package: libgbtools0t64
+Provides: ${t64:Provides}
+Replaces: libgbtools0
+Conflicts: libgbtools0 (<< ${source:Version})
Architecture: any
Multi-Arch: same
Section: libs
@@ -31,7 +34,7 @@
Architecture: any
Multi-Arch: same
Section: libdevel
-Depends: libgbtools0 (= ${binary:Version}),
+Depends: libgbtools0t64 (= ${binary:Version}),
${devlibs:Depends},
${misc:Depends}
Description: library for visualising sequence alignments (devel)
diff -Nru seqtools-4.44.1+dfsg/debian/libgbtools0t64.lintian-overrides
seqtools-4.44.1+dfsg/debian/libgbtools0t64.lintian-overrides
--- seqtools-4.44.1+dfsg/debian/libgbtools0t64.lintian-overrides
1970-01-01 00:00:00.000000000 +0000
+++ seqtools-4.44.1+dfsg/debian/libgbtools0t64.lintian-overrides
2024-02-03 21:32:02.000000000 +0000
@@ -0,0 +1 @@
+libgbtools0t64: package-name-doesnt-match-sonames libgbtools0
diff -Nru seqtools-4.44.1+dfsg/debian/rules seqtools-4.44.1+dfsg/debian/rules
--- seqtools-4.44.1+dfsg/debian/rules 2021-11-17 07:47:38.000000000 +0000
+++ seqtools-4.44.1+dfsg/debian/rules 2024-02-03 21:32:02.000000000 +0000
@@ -11,6 +11,7 @@
override_dh_install:
dh_install
d-shlibmove --commit \
+ --t64 \
--multiarch \
--devunversioned \
--exclude-la \
--- End Message ---
--- Begin Message ---
Source: seqtools
Source-Version: 4.44.1+dfsg-7.1
Done: Benjamin Drung <bdr...@debian.org>
We believe that the bug you reported is fixed in the latest version of
seqtools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1062...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Benjamin Drung <bdr...@debian.org> (supplier of updated seqtools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 29 Feb 2024 15:46:53 +0000
Source: seqtools
Architecture: source
Version: 4.44.1+dfsg-7.1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Benjamin Drung <bdr...@debian.org>
Closes: 1062891
Changes:
seqtools (4.44.1+dfsg-7.1) unstable; urgency=medium
.
* Non-maintainer upload.
* Rename libraries for 64-bit time_t transition. Closes: #1062891
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