Your message dated Thu, 29 Feb 2024 11:35:29 +0000
with message-id <e1rfehf-00aw60...@fasolo.debian.org>
and subject line Bug#1062681: fixed in macromoleculebuilder 4.0.0+dfsg-3.1
has caused the Debian Bug report #1062681,
regarding macromoleculebuilder: NMU diff for 64-bit time_t transition
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
1062681: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1062681
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: macromoleculebuilder
Version: 4.0.0+dfsg-3
Severity: serious
Tags: patch pending sid trixie
Justification: library ABI skew on upgrade
User: debian-...@lists.debian.org
Usertags: time-t
NOTICE: these changes must not be uploaded to unstable yet!
Dear maintainer,
As part of the 64-bit time_t transition required to support 32-bit
architectures in 2038 and beyond
(https://wiki.debian.org/ReleaseGoals/64bit-time), we have identified
macromoleculebuilder as a source package shipping runtime libraries whose ABI
either is affected by the change in size of time_t, or could not be
analyzed via abi-compliance-checker (and therefore to be on the safe
side we assume is affected).
To ensure that inconsistent combinations of libraries with their
reverse-dependencies are never installed together, it is necessary to
have a library transition, which is most easily done by renaming the
runtime library package.
Since turning on 64-bit time_t is being handled centrally through a change
to the default dpkg-buildflags (https://bugs.debian.org/1037136), it is
important that libraries affected by this ABI change all be uploaded close
together in time. Therefore I have prepared a 0-day NMU for
macromoleculebuilder
which will initially be uploaded to experimental if possible, then to
unstable after packages have cleared binary NEW.
Please find the patch for this NMU attached.
If you have any concerns about this patch, please reach out ASAP. Although
this package will be uploaded to experimental immediately, there will be a
period of several days before we begin uploads to unstable; so if information
becomes available that your package should not be included in the transition,
there is time for us to amend the planned uploads.
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 6.5.0-15-generic (SMP w/8 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: unable to detect
diff -Nru macromoleculebuilder-4.0.0+dfsg/debian/changelog
macromoleculebuilder-4.0.0+dfsg/debian/changelog
--- macromoleculebuilder-4.0.0+dfsg/debian/changelog 2023-06-23
05:37:57.000000000 +0000
+++ macromoleculebuilder-4.0.0+dfsg/debian/changelog 2024-02-02
16:53:45.000000000 +0000
@@ -1,3 +1,10 @@
+macromoleculebuilder (4.0.0+dfsg-3.1) experimental; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition.
+
+ -- Graham Inggs <gin...@debian.org> Fri, 02 Feb 2024 16:53:45 +0000
+
macromoleculebuilder (4.0.0+dfsg-3) unstable; urgency=medium
* Fix gemmi 0.6.2 support (Closes: #1037463)
diff -Nru macromoleculebuilder-4.0.0+dfsg/debian/control
macromoleculebuilder-4.0.0+dfsg/debian/control
--- macromoleculebuilder-4.0.0+dfsg/debian/control 2023-06-23
05:37:57.000000000 +0000
+++ macromoleculebuilder-4.0.0+dfsg/debian/control 2024-02-02
16:53:45.000000000 +0000
@@ -29,7 +29,7 @@
Architecture: any
Multi-Arch: same
Depends:
- libmmb4.0 (= ${binary:Version}),
+ libmmb4.0t64 (= ${binary:Version}),
${misc:Depends},
Breaks:
libmmblib-dev (<< 4.0.0),
@@ -43,7 +43,10 @@
.
This package contains the development files.
-Package: libmmb4.0
+Package: libmmb4.0t64
+Provides: ${t64:Provides}
+Replaces: libmmb4.0
+Breaks: libmmb4.0 (<< ${source:Version})
Section: libs
Architecture: any
Multi-Arch: same
diff -Nru macromoleculebuilder-4.0.0+dfsg/debian/libmmb4.0.install
macromoleculebuilder-4.0.0+dfsg/debian/libmmb4.0.install
--- macromoleculebuilder-4.0.0+dfsg/debian/libmmb4.0.install 2023-06-23
05:37:57.000000000 +0000
+++ macromoleculebuilder-4.0.0+dfsg/debian/libmmb4.0.install 1970-01-01
00:00:00.000000000 +0000
@@ -1 +0,0 @@
-usr/lib/*/libMMB.so.*
diff -Nru macromoleculebuilder-4.0.0+dfsg/debian/libmmb4.0t64.install
macromoleculebuilder-4.0.0+dfsg/debian/libmmb4.0t64.install
--- macromoleculebuilder-4.0.0+dfsg/debian/libmmb4.0t64.install 1970-01-01
00:00:00.000000000 +0000
+++ macromoleculebuilder-4.0.0+dfsg/debian/libmmb4.0t64.install 2023-06-23
05:37:57.000000000 +0000
@@ -0,0 +1 @@
+usr/lib/*/libMMB.so.*
diff -Nru macromoleculebuilder-4.0.0+dfsg/debian/libmmb4.0t64.lintian-overrides
macromoleculebuilder-4.0.0+dfsg/debian/libmmb4.0t64.lintian-overrides
--- macromoleculebuilder-4.0.0+dfsg/debian/libmmb4.0t64.lintian-overrides
1970-01-01 00:00:00.000000000 +0000
+++ macromoleculebuilder-4.0.0+dfsg/debian/libmmb4.0t64.lintian-overrides
2024-02-02 16:53:45.000000000 +0000
@@ -0,0 +1 @@
+libmmb4.0t64: package-name-doesnt-match-sonames libmmb4.0
--- End Message ---
--- Begin Message ---
Source: macromoleculebuilder
Source-Version: 4.0.0+dfsg-3.1
Done: Graham Inggs <gin...@debian.org>
We believe that the bug you reported is fixed in the latest version of
macromoleculebuilder, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1062...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Graham Inggs <gin...@debian.org> (supplier of updated macromoleculebuilder
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 29 Feb 2024 10:59:56 +0000
Source: macromoleculebuilder
Architecture: source
Version: 4.0.0+dfsg-3.1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Graham Inggs <gin...@debian.org>
Closes: 1062681
Changes:
macromoleculebuilder (4.0.0+dfsg-3.1) unstable; urgency=medium
.
* Non-maintainer upload.
* Rename libraries for 64-bit time_t transition. Closes: #1062681
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