Your message dated Sat, 24 Feb 2024 12:55:11 +0000
with message-id <e1rdryd-002mex...@fasolo.debian.org>
and subject line Bug#1056813: fixed in macs 3.0.1-1
has caused the Debian Bug report #1056813,
regarding macs: ftbfs with cython 3.0.x
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1056813: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1056813
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:macs
Version: 2.2.9.1-1
Severity: important
Tags: sid trixie
User: debian-pyt...@lists.debian.org
Usertags: cython3
[This bug is targeted to the upcoming trixie release]
The package fails to build in a test rebuild on at least arm64 with
cython 3.0.5, but succeeds to build with cython 0.29.36. Please
update the package to build with cython 3.0.5 (available in experimental).
If the package cannot be built with cython 3.0.5, please change the
build dependency from cython3 to cython3-legacy (available now in
unstable). There is no replacement for cython3-dbg.
Build logs building with cython 3.0.5 can be found at
https://people.debian.org/~stefanor/cython3/cython-3.0.5/
See also https://lists.debian.org/debian-python/2023/11/msg00034.html
--- End Message ---
--- Begin Message ---
Source: macs
Source-Version: 3.0.1-1
Done: Michael R. Crusoe <cru...@debian.org>
We believe that the bug you reported is fixed in the latest version of
macs, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1056...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated macs package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 24 Feb 2024 12:56:15 +0100
Source: macs
Architecture: source
Version: 3.0.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 1047612 1056813 1057991
Changes:
macs (3.0.1-1) unstable; urgency=medium
.
[ Andreas Tille ]
* New upstream version. Closes: #1056813
* New Build-Depends: python3-cykhash, python3-hmmlearn
* Fix location of simde header
* No runtime dependency from cython
Closes: #1057991
.
[ Michael R. Crusoe ]
* New upstream version
* Refreshed patches.
* d/copyright: MACS2/khash.h→MACS3/fermi-lite/khash.h
* d/clean: remove temp/ directory leftover from test execution.
Closes: #1047612
* d/rules: s/MACS2/MACS3/g for new major version.
* d/patches/simde: doesn't need forwarding
* d/control: build dep on newer packaging version of cykhash to pick
up Python 3.12 support.
* d/control: build dep on newer packaging version of hmmlearn to pick
up Python 3.12 support.
* d/rules: choose a better path to the launch script for testing
.
TODO: cmdline test failures:
16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.gappedPeak
16.18.2 checking hmmratac
hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak
16.18.3 checking hmmratac
hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak
16.18.4 checking hmmratac
hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak
* d/patch/no_install_depends_cython.patch removed, applied upstream.
* add patch to force the use of Python3.
* d/control: add build-dep on bc for the tests.
* d/patches/adapt_to_prelease_hmmlearn.patch: patch from the upstream
author to match the prelease version of hmmlearn in the archive.
* d/patches/invalid_escape_sequence: fix a SyntaxWarning.
Checksums-Sha1:
b8fb85c2bc033469ea3d4ae3f974d2b78e436fdb 2152 macs_3.0.1-1.dsc
6aa3b6265224a0ff4ab0087f338620755ed4af24 197400439 macs_3.0.1.orig.tar.gz
c279d6ef5a6387825d30102220f5f33213417f1b 1268816 macs_3.0.1-1.debian.tar.xz
898fc83727716b256c9517dfbc93f9ac3a9272b2 9302 macs_3.0.1-1_source.buildinfo
Checksums-Sha256:
8300826bd696ab31c81fe4bdb7924578d366d210d8a0960f5731d54cda4b5474 2152
macs_3.0.1-1.dsc
8a2f5b2dccfc255ea2fd5e54e0d6aa9c12f5ce83762b17b779ce2546ade860ce 197400439
macs_3.0.1.orig.tar.gz
0bed7d298871d11a808af98252edc89e68e2ab1364a8b7de56b54e0f7e0173be 1268816
macs_3.0.1-1.debian.tar.xz
3e517eedaa3f25285fae778e347fcbdc3250ef36811f85a355cb64e3e348e066 9302
macs_3.0.1-1_source.buildinfo
Files:
7313d5f9202cfd6a672b5b9923b5eb3e 2152 science optional macs_3.0.1-1.dsc
24d97ffa5f603717fcb14c2b0a4c1ecf 197400439 science optional
macs_3.0.1.orig.tar.gz
d92f0b5c3182c9c71226f45ba5d38eaf 1268816 science optional
macs_3.0.1-1.debian.tar.xz
e9f7f95c0f1787a87a708a59208df9da 9302 science optional
macs_3.0.1-1_source.buildinfo
-----BEGIN PGP SIGNATURE-----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=olmt
-----END PGP SIGNATURE-----
pgpuAeagr_M1Y.pgp
Description: PGP signature
--- End Message ---
