Your message dated Wed, 07 Feb 2024 07:23:43 +0000 with message-id <e1rxchx-001o1v...@fasolo.debian.org> and subject line Bug#1063275: fixed in r-bioc-rhtslib 2.4.1+dfsg-2 has caused the Debian Bug report #1063275, regarding r-bioc-rhtslib: identified for time_t transition but no ABI in shlibs to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1063275: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1063275 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: r-bioc-rhtslib Version: 2.4.1+dfsg-1 Severity: serious User: debian-...@lists.debian.org Usertags: time-t Hi Andreas, Analysis of the archive for the 64-bit time_t transition[0][1] identifies r-bioc-rhtslib as an affected package, on the basis that it depends on some library whose ABI is sensitive to time_t, which requires reverse-dependencies to be built with LFS support enabled, and r-bioc-rhtslib's own ABI is sensitive to LFS support. However, r-bioc-rhtslib's shlibs file declares a dependency on a library package name that contains no ABI information: $ cat DEBIAN/shlibs libhts 3 r-bioc-rhtslib (>= 2.4.1+dfsg) $ It is not obvious that we should rename the package to 'r-bioc-rhtslibt64' as part of this transition. Looking at the archive, there are packages built from the separate r-bioc-rsamtools and r-bioc-variantannotation source packages that depend on this library. Since there is no self-evident thing to do with the library package name here, we will not be handling this package as part of the mass NMUs. Instead I am filing a serious bug because partial upgrades from bookworm to trixie on 32-bit architectures will result in ABI skew and may result in broken behavior. Thanks, -- Steve Langasek Give me a lever long enough and a Free OS Debian Developer to set it on, and I can move the world. Ubuntu Developer https://www.debian.org/ slanga...@ubuntu.com vor...@debian.org [0] https://wiki.debian.org/ReleaseGoals/64bit-time [1] https://lists.debian.org/debian-devel/2024/01/msg00041.html
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--- Begin Message ---Source: r-bioc-rhtslib Source-Version: 2.4.1+dfsg-2 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of r-bioc-rhtslib, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1063...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated r-bioc-rhtslib package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 07 Feb 2024 07:58:13 +0100 Source: r-bioc-rhtslib Architecture: source Version: 2.4.1+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net> Changed-By: Andreas Tille <ti...@debian.org> Closes: 1063275 Changes: r-bioc-rhtslib (2.4.1+dfsg-2) unstable; urgency=medium . * Restrict architectures to 64bit to avoid time_t transition Closes: #1063275 Checksums-Sha1: 9a41b02d035c9880ebb0e90fc7145e761c239ab6 2286 r-bioc-rhtslib_2.4.1+dfsg-2.dsc 1fadb6ea5b0abcf9319161679f02934c37dd0732 4320 r-bioc-rhtslib_2.4.1+dfsg-2.debian.tar.xz ed822d08c3f6a6de9ea077d8f956e50d719228e0 11453 r-bioc-rhtslib_2.4.1+dfsg-2_amd64.buildinfo Checksums-Sha256: 154aa3e5708f6b7585d268ae77149ba14f2122033350284c9f5d54334dbefea6 2286 r-bioc-rhtslib_2.4.1+dfsg-2.dsc a01dbe4eae9d026c6c3425ab715e21f0a329af9a07b6ad91c4867c15edc205e3 4320 r-bioc-rhtslib_2.4.1+dfsg-2.debian.tar.xz a8a17047fe2debed41e49726154a07865d75824a578b57ab12ff22c6f7e562a4 11453 r-bioc-rhtslib_2.4.1+dfsg-2_amd64.buildinfo Files: 66dbdc0bcca40d1dca280b67e848b26b 2286 gnu-r optional r-bioc-rhtslib_2.4.1+dfsg-2.dsc a75cce87be6b81af8009f089a728285a 4320 gnu-r optional r-bioc-rhtslib_2.4.1+dfsg-2.debian.tar.xz 69005620990ef469f3fc286adb44f29f 11453 gnu-r optional r-bioc-rhtslib_2.4.1+dfsg-2_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmXDKvMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEKsA/9EFKpj4ZLQAJ+jKwtyT61tq+zf+ZE+hK6 rItqTMMpKWdy07zBTIwaC8PK9r4Fk21QECXbBKCiMRS4chBrrbk1Tsnp8pwKab8s 8jCq3dwJhP+INfvURgc6u8FEfh54WJOD7SoNDrNF0mAxr/uB9o9RBM0m/xiBVTNS h5+YPl+jLsGaXODwL6sn8sUGYTgH/asnnKtUmYPCMjEBhp7Oql+gg9SbVSOK+xuX BR2PYAfGr3nJ64ndon0pzKunrex3Q599dXpOjhRkUGRWJ98Nl5U/rOlrjuYzK88Y qGulTS/hMaj6AsA+zRvPb3h1P8n57eeWY3tpm9JEuBetBwQAppQCc1Y1Pz0J/ghi rS/h+nThzXgw1Wyf6Vd77qbaUn/m90hra9fzGM2hVYkYkn/9oYgU60nWjr7gDQV2 Al5fULhUaJCgc42cGpBs72z3jKilAAw2EVTK5NB+709rGmxpctWh4nq8c01koYrr 8dRzIWcuSZBQ+h8OoZPmuiq4cebRMjWoOyh4Hq17ZXu6CnTEO8TW7ZhBh2w7GD82 3ywOJvkSZkpBO6ijOl60JmX81M4JMd5bk26a/ymvoSyFNcNGwtAFimhgKBJoJWi1 Y+Vn0u747ouQuUcABhzGAYzu9zpHC0m5EapdLYcC6VERzfuYauERjw2jzexykX/S W7X+Zebtf0k= =Nu9W -----END PGP SIGNATURE-----
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