Your message dated Mon, 25 Dec 2023 17:20:50 +0000
with message-id <e1rhodg-00gtvz...@fasolo.debian.org>
and subject line Bug#1058558: fixed in seqkit 2.3.1+ds-2
has caused the Debian Bug report #1058558,
regarding seqkit: FTBFS: make: *** [debian/rules:8: binary] Error 25
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1058558: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1058558
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: seqkit
Version: 2.3.1+ds-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20231212 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules binary
> dh binary --buildsystem=golang --with=golang --builddirectory=build #
> --sourcedirectory=seqkit
> dh_update_autotools_config -O--buildsystem=golang -O--builddirectory=build
> dh_autoreconf -O--buildsystem=golang -O--builddirectory=build
> dh_auto_configure -O--buildsystem=golang -O--builddirectory=build
> dh_auto_build -O--buildsystem=golang -O--builddirectory=build
> cd build && go install -trimpath -v -p 8
> github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit
> github.com/shenwei356/seqkit/seqkit/cmd
> src/github.com/shenwei356/seqkit/seqkit/cmd/pair.go:32:2: cannot find package
> "github.com/pkg/errors" in any of:
> /usr/lib/go-1.21/src/github.com/pkg/errors (from $GOROOT)
> /<<PKGBUILDDIR>>/build/src/github.com/pkg/errors (from $GOPATH)
> dh_auto_build: error: cd build && go install -trimpath -v -p 8
> github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit
> github.com/shenwei356/seqkit/seqkit/cmd returned exit code 1
> make: *** [debian/rules:8: binary] Error 25
The full build log is available from:
http://qa-logs.debian.net/2023/12/12/seqkit_2.3.1+ds-1_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20231212;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20231212&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: seqkit
Source-Version: 2.3.1+ds-2
Done: Nilesh Patra <nil...@debian.org>
We believe that the bug you reported is fixed in the latest version of
seqkit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1058...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <nil...@debian.org> (supplier of updated seqkit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 25 Dec 2023 22:26:02 +0530
Source: seqkit
Architecture: source
Version: 2.3.1+ds-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nil...@debian.org>
Closes: 1046668 1058558
Changes:
seqkit (2.3.1+ds-2) unstable; urgency=medium
.
* Update Build-Depends, fix with cme (Closes: #1058558)
* Add d/clean to cleanup generate artifacts (Closes: #1046668)
Checksums-Sha1:
16266bc24931359dfd7de371db6d6a4a2741fedd 2502 seqkit_2.3.1+ds-2.dsc
6f9b3a2eeb7907f68a32229de13006cd6c6768da 10774768
seqkit_2.3.1+ds-2.debian.tar.xz
5583fb9dea764e18f68a96619c4694b080d8d2b0 10880
seqkit_2.3.1+ds-2_source.buildinfo
Checksums-Sha256:
143e83f111c3c047b52646824f8051d6263dadb455f884af2f8a0a8ac2f7dca1 2502
seqkit_2.3.1+ds-2.dsc
475b89d025f4cbaeb818f57bf4b3de3643bfd1cc3e03c6e8367a8fa39f87f9c4 10774768
seqkit_2.3.1+ds-2.debian.tar.xz
6b11a074bb2faede0174317813331d4a7f22c8fd217e22b2a8ebc444829dfe29 10880
seqkit_2.3.1+ds-2_source.buildinfo
Files:
2fbacb07368760bf2670f7103c4e992c 2502 science optional seqkit_2.3.1+ds-2.dsc
25ffc95461c2f491b5a82f8c9f8e68ec 10774768 science optional
seqkit_2.3.1+ds-2.debian.tar.xz
89996a590589e1e66ec8c3b7fb4a47ce 10880 science optional
seqkit_2.3.1+ds-2_source.buildinfo
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--- End Message ---
