Your message dated Fri, 22 Dec 2023 16:06:17 +0000
with message-id <e1rgi2t-00epvx...@fasolo.debian.org>
and subject line Bug#978257: fixed in pynwb 2.5.0-1
has caused the Debian Bug report #978257,
regarding pynwb: FTBFS: dh_auto_test: error: pybuild --test -i python{version}
-p 3.9 returned exit code 13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
978257: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=978257
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: pynwb
Version: 1.2.1-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20201226 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules build
> dh build --with python3 --buildsystem=pybuild
> dh_update_autotools_config -O--buildsystem=pybuild
> dh_autoreconf -O--buildsystem=pybuild
> dh_auto_configure -O--buildsystem=pybuild
> pybuild --configure -i python{version} -p 3.9
> I: pybuild base:232: python3.9 setup.py config
> found these packages: ['pynwb', 'pynwb.legacy', 'pynwb.testing', 'pynwb.io',
> 'pynwb.legacy.io']
> ['h5py>=2.9', 'hdmf>=1.5.4,<2', 'numpy>=1.16', 'pandas>=0.23',
> 'python-dateutil>=2.7']
> running config
> dh_auto_build -O--buildsystem=pybuild
> pybuild --build -i python{version} -p 3.9
> I: pybuild base:232: /usr/bin/python3 setup.py build
> found these packages: ['pynwb', 'pynwb.legacy', 'pynwb.testing', 'pynwb.io',
> 'pynwb.legacy.io']
> ['h5py>=2.9', 'hdmf>=1.5.4,<2', 'numpy>=1.16', 'pandas>=0.23',
> 'python-dateutil>=2.7']
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/validate.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/ecephys.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/core.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/retinotopy.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/spec.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/image.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/misc.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/file.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/_version.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/device.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/icephys.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/ogen.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/ophys.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/behavior.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/base.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> copying src/pynwb/epoch.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy
> copying src/pynwb/legacy/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy
> copying src/pynwb/legacy/map.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing
> copying src/pynwb/testing/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing
> copying src/pynwb/testing/make_test_files.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing
> copying src/pynwb/testing/utils.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing
> copying src/pynwb/testing/testh5io.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/ecephys.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/core.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/retinotopy.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/image.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/misc.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/file.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/icephys.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/ogen.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/ophys.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/behavior.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/base.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> copying src/pynwb/io/epoch.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/ecephys.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/retinotopy.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/image.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/misc.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/file.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/icephys.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/ogen.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/ophys.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/behavior.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/base.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/epoch.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.retinotopy.yaml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.epoch.yaml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.image.yaml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.base.yaml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.icephys.yaml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.behavior.yaml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.ophys.yaml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.ecephys.yaml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.file.yaml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.misc.yaml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.namespace.yaml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.ogen.yaml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core
> UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/_version.py
> set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/_version.py to
> '1.2.1'
> dh_auto_test -O--buildsystem=pybuild
> pybuild --test -i python{version} -p 3.9
> I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build;
> python3.9 -m unittest discover -v
> test_read (tests.back_compat.test_read.TestReadOldVersions)
> Attempt to read and validate all NWB files in the same folder as this file.
> The folder should contain NWB files ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/tests/back_compat/test_read.py:24:
> UserWarning: 1.0.3_str_experimenter.nwb: root/general/experimenter
> (general/experimenter): incorrect shape - expected an array of shape
> '[None]', got non-array data 'one experimenter'
> warnings.warn('%s: %s' % (f.name, e))
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/tests/back_compat/test_read.py:24:
> UserWarning: 1.0.3_str_pub.nwb: root/general/related_publications
> (general/related_publications): incorrect shape - expected an array of shape
> '[None]', got non-array data 'one publication'
> warnings.warn('%s: %s' % (f.name, e))
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/tests/back_compat/test_read.py:24:
> UserWarning: 1.0.2_str_experimenter.nwb: root/general/experimenter
> (general/experimenter): incorrect shape - expected an array of shape
> '[None]', got non-array data 'one experimenter'
> warnings.warn('%s: %s' % (f.name, e))
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/tests/back_compat/test_read.py:24:
> UserWarning: 1.0.2_str_pub.nwb: root/general/related_publications
> (general/related_publications): incorrect shape - expected an array of shape
> '[None]', got non-array data 'one publication'
> warnings.warn('%s: %s' % (f.name, e))
> ok
> test_roundtrip (tests.integration.hdf5.test_base.TestTimeSeriesIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'TimeSeries/timestamps': Value with data type
> int64 is being converted to data type float64 as specified.
> warnings.warn(w.message, w.category)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_timestamps_linking
> (tests.integration.hdf5.test_base.TestTimeSeriesLinking)
> Test that timestamps get linked to in TimeSeries ...
> /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:256:
> DtypeConversionWarning: Spec 'TimeSeries/timestamps': Value with data type
> int64 is being converted to data type float64 as specified.
> warnings.warn(full_warning_msg, DtypeConversionWarning)
> /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(msg, MissingRequiredBuildWarning)
> ok
> test_roundtrip (tests.integration.hdf5.test_device.TestDeviceIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip
> (tests.integration.hdf5.test_ecephys.ClusterWaveformsConstructor)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ecephys.EventDetectionConstructor)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ecephys.EventWaveformConstructor)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'SpikeEventSeries/timestamps': Value with data
> type int64 is being converted to data type float64 as specified.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip
> (tests.integration.hdf5.test_ecephys.FeatureExtractionConstructor)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ecephys.TestClusteringIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_eg_ref (tests.integration.hdf5.test_ecephys.TestElectricalSeriesIO)
> Test that the electrode DynamicTableRegion references of the read
> ElectricalSeries have a group that ... ok
> test_roundtrip (tests.integration.hdf5.test_ecephys.TestElectricalSeriesIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ecephys.TestElectrodeGroupIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ecephys.TestFilteredEphysIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ecephys.TestLFPIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_icephys.TestCurrentClampSeries)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip
> (tests.integration.hdf5.test_icephys.TestCurrentClampStimulusSeries)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_icephys.TestIZeroClampSeries)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip
> (tests.integration.hdf5.test_icephys.TestIntracellularElectrode)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_icephys.TestPatchClampSeries)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'PatchClampSeries/sweep_number': Value with
> data type int64 is being converted to data type uint64 as specified.
> warnings.warn(w.message, w.category)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'SweepTable/sweep_number': Value with data type
> int64 is being converted to data type uint64 as specified.
> warnings.warn(w.message, w.category)
> ok
> test_container
> (tests.integration.hdf5.test_icephys.TestSweepTableRoundTripComplicated)
> Test properties of the SweepTable read from file ... ok
> test_roundtrip
> (tests.integration.hdf5.test_icephys.TestSweepTableRoundTripComplicated)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'PatchClampSeries/sweep_number': Value with
> data type int64 is being converted to data type uint64 as specified.
> warnings.warn(w.message, w.category)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'SweepTable/sweep_number': Value with data type
> int64 is being converted to data type uint64 as specified.
> warnings.warn(w.message, w.category)
> ok
> test_container
> (tests.integration.hdf5.test_icephys.TestSweepTableRoundTripEasy)
> Test properties of the SweepTable read from file ... ok
> test_roundtrip
> (tests.integration.hdf5.test_icephys.TestSweepTableRoundTripEasy)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'PatchClampSeries/sweep_number': Value with
> data type int64 is being converted to data type uint64 as specified.
> warnings.warn(w.message, w.category)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'SweepTable/sweep_number': Value with data type
> int64 is being converted to data type uint64 as specified.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip (tests.integration.hdf5.test_icephys.TestVoltageClampSeries)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip
> (tests.integration.hdf5.test_icephys.TestVoltageClampStimulusSeries)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_image.TestOpticalSeriesIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'OpticalSeries/timestamps': Value with data
> type int64 is being converted to data type float64 as specified.
> warnings.warn(w.message, w.category)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip (tests.integration.hdf5.test_misc.TestDecompositionSeriesIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip (tests.integration.hdf5.test_misc.TestUnitsFileIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_to_dataframe (tests.integration.hdf5.test_misc.TestUnitsFileIO) ... ok
> test_get_obs_intervals (tests.integration.hdf5.test_misc.TestUnitsIO)
> Test whether the Units observation intervals read from file are what was
> written ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'Units/spike_times': Value with data type int64
> is being converted to data type float64 as specified.
> warnings.warn(w.message, w.category)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'Units/obs_intervals': Value with data type
> int64 is being converted to data type float64 as specified.
> warnings.warn(w.message, w.category)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_get_spike_times (tests.integration.hdf5.test_misc.TestUnitsIO)
> Test whether the Units spike times read from file are what was written ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'Units/spike_times': Value with data type int64
> is being converted to data type float64 as specified.
> warnings.warn(w.message, w.category)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'Units/obs_intervals': Value with data type
> int64 is being converted to data type float64 as specified.
> warnings.warn(w.message, w.category)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip (tests.integration.hdf5.test_misc.TestUnitsIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'Units/spike_times': Value with data type int64
> is being converted to data type float64 as specified.
> warnings.warn(w.message, w.category)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'Units/obs_intervals': Value with data type
> int64 is being converted to data type float64 as specified.
> warnings.warn(w.message, w.category)
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_link_root
> (tests.integration.hdf5.test_modular_storage.TestTimeSeriesModular) ...
> /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(msg, MissingRequiredBuildWarning)
> ok
> test_roundtrip
> (tests.integration.hdf5.test_modular_storage.TestTimeSeriesModular) ... ok
> test_roundtrip
> (tests.integration.hdf5.test_nwbfile.TestDynamicTableFromDataframeIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_to_dataframe
> (tests.integration.hdf5.test_nwbfile.TestDynamicTableFromDataframeIO) ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip (tests.integration.hdf5.test_nwbfile.TestElectrodes) ... ok
> test_roundtrip (tests.integration.hdf5.test_nwbfile.TestElectrodesRegion) ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> DtypeConversionWarning: Spec 'ElectricalSeries/timestamps': Value with data
> type int64 is being converted to data type float64 as specified.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip (tests.integration.hdf5.test_nwbfile.TestEmptySubjectIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip (tests.integration.hdf5.test_nwbfile.TestEpochsIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_df_comparison (tests.integration.hdf5.test_nwbfile.TestEpochsIODf)
> Test that the epochs read from file converted to a data frame are the same as
> the data frame converted ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_df_comparison_no_ts (tests.integration.hdf5.test_nwbfile.TestEpochsIODf)
> Test that the epochs read from file converted to a data frame are the same as
> the data frame converted ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip (tests.integration.hdf5.test_nwbfile.TestEpochsIODf)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip
> (tests.integration.hdf5.test_nwbfile.TestExperimentersConstructorRoundtrip)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(msg, MissingRequiredBuildWarning)
> ok
> test_roundtrip
> (tests.integration.hdf5.test_nwbfile.TestExperimentersSetterRoundtrip)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_nwbfile.TestInvalidTimes)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_children (tests.integration.hdf5.test_nwbfile.TestNWBFileHDF5IO)
> Test that the TimeSeries and processing module are children of their
> respective parents ... ok
> test_read (tests.integration.hdf5.test_nwbfile.TestNWBFileHDF5IO)
> Test reading the NWBFile using HDF5IO ...
> /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:256:
> DtypeConversionWarning: Spec 'TimeSeries/timestamps': Value with data type
> int64 is being converted to data type float64 as specified.
> warnings.warn(full_warning_msg, DtypeConversionWarning)
> /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(msg, MissingRequiredBuildWarning)
> ok
> test_write (tests.integration.hdf5.test_nwbfile.TestNWBFileHDF5IO)
> Test writing the NWBFile using HDF5IO ... ok
> test_roundtrip (tests.integration.hdf5.test_nwbfile.TestNWBFileIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip
> (tests.integration.hdf5.test_nwbfile.TestPublicationsConstructorRoundtrip)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip
> (tests.integration.hdf5.test_nwbfile.TestPublicationsSetterRoundtrip)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_nwbfile.TestSubjectIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip (tests.integration.hdf5.test_nwbfile.TestTrials)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip (tests.integration.hdf5.test_nwbfile.TestUnits)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_roundtrip (tests.integration.hdf5.test_ogen.TestOptogeneticSeriesIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip
> (tests.integration.hdf5.test_ogen.TestOptogeneticStimulusSiteIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ophys.MaskIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ophys.TestImageMaskIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ophys.TestImagingPlaneIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ophys.TestPixelMaskIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ophys.TestPlaneSegmentationIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ophys.TestRoiResponseSeriesIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_ophys.TestTwoPhotonSeriesIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ... ok
> test_roundtrip (tests.integration.hdf5.test_scratch.TestScratchDataIO)
> Test whether the test Container read from file has the same contents as the
> original test Container and ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(w.message, w.category)
> ok
> test_scratch_container
> (tests.integration.hdf5.test_scratch.TestScratchDataIO) ...
> /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(msg, MissingRequiredBuildWarning)
> ok
> test_scratch_container_with_name
> (tests.integration.hdf5.test_scratch.TestScratchDataIO) ... ok
> test_scratch_container_with_notes
> (tests.integration.hdf5.test_scratch.TestScratchDataIO) ... ok
> test_scratch_convert_DataFrame
> (tests.integration.hdf5.test_scratch.TestScratchDataIO) ... ok
> test_scratch_convert_DataFrame_table_desc
> (tests.integration.hdf5.test_scratch.TestScratchDataIO)
> Test round trip convert of DataFrame with a table description ...
> /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(msg, MissingRequiredBuildWarning)
> ok
> test_scratch_convert_list
> (tests.integration.hdf5.test_scratch.TestScratchDataIO) ... ok
> test_scratch_convert_ndarray
> (tests.integration.hdf5.test_scratch.TestScratchDataIO) ... ok
> test_append (tests.integration.test_io.TestAppend) ... ok
> test_gzip_timestamps (tests.integration.test_io.TestH5DataIO) ... ok
> test_write_dataset_custom_chunks (tests.integration.test_io.TestH5DataIO) ...
> /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:256:
> DtypeConversionWarning: Spec 'TimeSeries/timestamps': Value with data type
> int64 is being converted to data type float64 as specified.
> warnings.warn(full_warning_msg, DtypeConversionWarning)
> ok
> test_write_dataset_custom_compress (tests.integration.test_io.TestH5DataIO)
> ... ok
> test_write_dataset_custom_fillvalue (tests.integration.test_io.TestH5DataIO)
> ... ok
> test_write_dataset_datachunkiterator_data_and_time
> (tests.integration.test_io.TestH5DataIO) ... ok
> test_write_dataset_datachunkiterator_data_only
> (tests.integration.test_io.TestH5DataIO) ... ok
> test_write_dataset_datachunkiterator_with_compression
> (tests.integration.test_io.TestH5DataIO) ... ok
> test_nwbio (tests.integration.test_io.TestHDF5Writer) ... ok
> test_write_cache_spec (tests.integration.test_io.TestHDF5Writer)
> Round-trip test for writing spec and reading it back in ... ok
> test_write_clobber (tests.integration.test_io.TestHDF5Writer) ... ok
> test_write_no_cache_spec (tests.integration.test_io.TestHDF5Writer)
> Round-trip test for not writing spec ... ok
> test_nwbio (tests.integration.test_io.TestHDF5WriterWithInjectedFile) ... ok
> test_write_cache_spec
> (tests.integration.test_io.TestHDF5WriterWithInjectedFile)
> Round-trip test for writing spec and reading it back in ... ok
> test_write_clobber (tests.integration.test_io.TestHDF5WriterWithInjectedFile)
> ... ok
> test_constructor (tests.unit.test_MultiContainerInterface.MCITests) ... ok
> test_image (tests.unit.test_base.TestImage) ... ok
> test_images (tests.unit.test_base.TestImages) ... ok
> test_add_data_interface (tests.unit.test_base.TestProcessingModule) ... ok
> test_deprecated_add_container (tests.unit.test_base.TestProcessingModule) ...
> ok
> test_deprecated_add_data_interface
> (tests.unit.test_base.TestProcessingModule) ... ok
> test_deprecated_get_container (tests.unit.test_base.TestProcessingModule) ...
> ok
> test_deprecated_get_data_interface
> (tests.unit.test_base.TestProcessingModule) ... ok
> test_get_data_interface (tests.unit.test_base.TestProcessingModule) ... ok
> test_getitem (tests.unit.test_base.TestProcessingModule) ... ok
> test_init (tests.unit.test_base.TestProcessingModule) ... ok
> test_conflicting_time_args (tests.unit.test_base.TestTimeSeries) ... ok
> test_data_timeseries (tests.unit.test_base.TestTimeSeries) ... ok
> test_dataio_dci_data (tests.unit.test_base.TestTimeSeries) ... ok
> test_dataio_list_data (tests.unit.test_base.TestTimeSeries) ... ok
> test_dci_data (tests.unit.test_base.TestTimeSeries) ... ok
> test_dci_data_arr (tests.unit.test_base.TestTimeSeries) ... ok
> test_init_data (tests.unit.test_base.TestTimeSeries) ... ok
> test_init_datalink_set (tests.unit.test_base.TestTimeSeries) ... ok
> test_init_no_parent (tests.unit.test_base.TestTimeSeries) ... ok
> test_init_rate (tests.unit.test_base.TestTimeSeries) ... ok
> test_init_timestamps (tests.unit.test_base.TestTimeSeries) ... ok
> test_init_timestampslink_set (tests.unit.test_base.TestTimeSeries) ... ok
> test_no_starting_time (tests.unit.test_base.TestTimeSeries) ... ok
> test_no_time (tests.unit.test_base.TestTimeSeries) ... ok
> test_nodata (tests.unit.test_base.TestTimeSeries) ... ok
> test_timestamps_timeseries (tests.unit.test_base.TestTimeSeries) ... ok
> test_init (tests.unit.test_behavior.BehavioralEpochsConstructor) ... ok
> test_init (tests.unit.test_behavior.BehavioralEventsConstructor) ... ok
> test_init (tests.unit.test_behavior.BehavioralTimeSeriesConstructor) ... ok
> test_init (tests.unit.test_behavior.CompassDirectionConstructor) ... ok
> test_init (tests.unit.test_behavior.EyeTrackingConstructor) ... ok
> test_init (tests.unit.test_behavior.PositionConstructor) ... ok
> test_init (tests.unit.test_behavior.PupilTrackingConstructor) ... ok
> test_init (tests.unit.test_behavior.SpatialSeriesConstructor) ... ok
> test_available_namespaces (tests.unit.test_core.TestAvailableNamespaces) ...
> ok
> test_add_default (tests.unit.test_core.TestLabelledDict) ... ok
> test_add_nondefault (tests.unit.test_core.TestLabelledDict) ... ok
> test_constructor (tests.unit.test_core.TestNWBContainer)
> Test constructor ... ok
> test_nwbfields (tests.unit.test_core.TestNWBContainer)
> Test that getters and setters work for nwbfields ... ok
> test_print_file (tests.unit.test_core.TestPrint) ... ok
> test_constructor (tests.unit.test_core_NWBContainer.TestNWBContainer)
> Test constructor ... ok
> test_nwbfields (tests.unit.test_core_NWBContainer.TestNWBContainer)
> Test that getters and setters work for nwbfields ... ok
> test_init (tests.unit.test_device.DeviceConstructorBoth) ... ok
> test_init (tests.unit.test_ecephys.ClusterWaveformsConstructor) ... ok
> test_init (tests.unit.test_ecephys.ClusteringConstructor) ... ok
> test_init (tests.unit.test_ecephys.ElectricalSeriesConstructor) ... ok
> test_invalid_data_shape (tests.unit.test_ecephys.ElectricalSeriesConstructor)
> ... ok
> test_link (tests.unit.test_ecephys.ElectricalSeriesConstructor) ... ok
> test_init (tests.unit.test_ecephys.ElectrodeGroupConstructor) ... ok
> test_init (tests.unit.test_ecephys.EventDetectionConstructor) ... ok
> test_init (tests.unit.test_ecephys.EventWaveformConstructor) ... ok
> test_init (tests.unit.test_ecephys.FeatureExtractionConstructor) ... ok
> test_invalid_init_mismatched_description
> (tests.unit.test_ecephys.FeatureExtractionConstructor) ... ok
> test_invalid_init_mismatched_description2
> (tests.unit.test_ecephys.FeatureExtractionConstructor) ... ok
> test_invalid_init_mismatched_electrodes
> (tests.unit.test_ecephys.FeatureExtractionConstructor) ... ok
> test_invalid_init_mismatched_event_times
> (tests.unit.test_ecephys.FeatureExtractionConstructor) ... ok
> test_add_electrical_series (tests.unit.test_ecephys.FilteredEphysTest) ... ok
> test_init (tests.unit.test_ecephys.FilteredEphysTest) ... ok
> test_add_electrical_series (tests.unit.test_ecephys.LFPTest) ... ok
> test_init (tests.unit.test_ecephys.SpikeEventSeriesConstructor) ... ok
> test_no_rate (tests.unit.test_ecephys.SpikeEventSeriesConstructor) ... ok
> test_dataframe_roundtrip (tests.unit.test_epoch.TimeIntervalsTest) ... ok
> test_dataframe_roundtrip_drop_ts (tests.unit.test_epoch.TimeIntervalsTest)
> ... ok
> test_from_dataframe (tests.unit.test_epoch.TimeIntervalsTest) ... ok
> test_from_dataframe_missing_required_cols
> (tests.unit.test_epoch.TimeIntervalsTest) ... ok
> test_frorm_dataframe_missing_supplied_col
> (tests.unit.test_epoch.TimeIntervalsTest) ... ok
> test_init (tests.unit.test_epoch.TimeIntervalsTest) ... ok
> test_no_tags (tests.unit.test_epoch.TimeIntervalsTest) ... ok
> test_catch_dup_name (tests.unit.test_extension.TestCatchDupNS) ... FAIL
> test_catch_duplicate_spec (tests.unit.test_extension.TestCatchDuplicateSpec)
> ... ok
> test_export (tests.unit.test_extension.TestExtension) ... ok
> test_get_class (tests.unit.test_extension.TestExtension) ... ok
> test_lab_meta (tests.unit.test_extension.TestExtension) ... ok
> test_lab_meta_auto (tests.unit.test_extension.TestExtension) ... ok
> test_load_namespace (tests.unit.test_extension.TestExtension) ... ok
> test_load_namespace_with_reftype_attribute
> (tests.unit.test_extension.TestExtension) ... ok
> test_load_namespace_with_reftype_attribute_check_autoclass_const
> (tests.unit.test_extension.TestExtension) ... ok
> test_access_group_after_io (tests.unit.test_file.NWBFileTest)
> Motivated by #739 ... ok
> test_access_processing (tests.unit.test_file.NWBFileTest) ... ok
> test_add_acquisition (tests.unit.test_file.NWBFileTest) ... ok
> test_add_acquisition_check_dups (tests.unit.test_file.NWBFileTest) ... ok
> test_add_acquisition_invalid_name (tests.unit.test_file.NWBFileTest) ... ok
> test_add_analysis (tests.unit.test_file.NWBFileTest) ... ok
> test_add_electrode (tests.unit.test_file.NWBFileTest) ... ok
> test_add_invalid_time_interval (tests.unit.test_file.NWBFileTest) ... ok
> test_add_invalid_time_w_ts (tests.unit.test_file.NWBFileTest) ... ok
> test_add_invalid_times_column (tests.unit.test_file.NWBFileTest) ... ok
> test_add_stimulus (tests.unit.test_file.NWBFileTest) ... ok
> test_add_stimulus_template (tests.unit.test_file.NWBFileTest) ... ok
> test_add_trial (tests.unit.test_file.NWBFileTest) ... ok
> test_add_trial_column (tests.unit.test_file.NWBFileTest) ... ok
> test_add_unit (tests.unit.test_file.NWBFileTest) ... ok
> test_add_unit_column (tests.unit.test_file.NWBFileTest) ... ok
> test_all_children (tests.unit.test_file.NWBFileTest) ... ok
> test_constructor (tests.unit.test_file.NWBFileTest) ... ok
> test_copy (tests.unit.test_file.NWBFileTest) ... ok
> test_create_custom_intervals (tests.unit.test_file.NWBFileTest) ... ok
> test_create_electrode_group (tests.unit.test_file.NWBFileTest) ... ok
> test_create_electrode_group_invalid_index (tests.unit.test_file.NWBFileTest)
> Test the case where the user creates an electrode table region with ... ok
> test_epoch_tags (tests.unit.test_file.NWBFileTest) ... ok
> test_fail_if_source_script_file_name_without_source_script
> (tests.unit.test_file.NWBFileTest) ... ok
> test_get_acquisition_empty (tests.unit.test_file.NWBFileTest) ... ok
> test_get_acquisition_multiple_elements (tests.unit.test_file.NWBFileTest) ...
> ok
> test_get_neurodata_type (tests.unit.test_file.NWBFileTest) ... ok
> test_multi_experimenters (tests.unit.test_file.NWBFileTest) ... ok
> test_multi_publications (tests.unit.test_file.NWBFileTest) ... ok
> test_print_units (tests.unit.test_file.NWBFileTest) ... ok
> test_set_electrode_table (tests.unit.test_file.NWBFileTest) ... ok
> test_constructor (tests.unit.test_file.SubjectTest) ... ok
> test_nwbfile_constructor (tests.unit.test_file.SubjectTest) ... ok
> test_simple (tests.unit.test_file.TestCacheSpec) ...
> /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(msg, MissingRequiredBuildWarning)
> FAIL
> test_simple (tests.unit.test_file.TestNoCacheSpec) ...
> /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653:
> MissingRequiredBuildWarning: NWBFile 'root' is missing required value for
> attribute 'devices'.
> warnings.warn(msg, MissingRequiredBuildWarning)
> ok
> test_reftime_tzaware (tests.unit.test_file.TestTimestampsRefAware) ... ok
> test_reftime_default (tests.unit.test_file.TestTimestampsRefDefault) ... ok
> test_init (tests.unit.test_icephys.CurrentClampSeriesConstructor) ... ok
> test_init (tests.unit.test_icephys.CurrentClampStimulusSeriesConstructor) ...
> ok
> test_init (tests.unit.test_icephys.IZeroClampSeriesConstructor) ... ok
> test_constructor (tests.unit.test_icephys.IntracellularElectrodeConstructor)
> ... ok
> test_default (tests.unit.test_icephys.PatchClampSeriesConstructor) ... ok
> test_sweepNumber_large_and_valid
> (tests.unit.test_icephys.PatchClampSeriesConstructor) ... ok
> test_sweepNumber_throws_with_Float
> (tests.unit.test_icephys.PatchClampSeriesConstructor) ... ok
> test_sweepNumber_throws_with_NaN
> (tests.unit.test_icephys.PatchClampSeriesConstructor) ... ok
> test_sweepNumber_throws_with_negative
> (tests.unit.test_icephys.PatchClampSeriesConstructor) ... ok
> test_sweepNumber_valid (tests.unit.test_icephys.PatchClampSeriesConstructor)
> ... ok
> test_sweepNumber_valid_np
> (tests.unit.test_icephys.PatchClampSeriesConstructor) ... ok
> test_init (tests.unit.test_icephys.VoltageClampSeriesConstructor) ... ok
> test_init (tests.unit.test_icephys.VoltageClampStimulusSeriesConstructor) ...
> ok
> test_init (tests.unit.test_image.ImageMaskSeriesConstructor) ... ok
> test_init (tests.unit.test_image.ImageSeriesConstructor) ... ok
> test_init (tests.unit.test_image.IndexSeriesConstructor) ... ok
> test_init (tests.unit.test_image.OpticalSeriesConstructor) ... ok
> test_grayscale_image (tests.unit.test_image.TestImageSubtypes) ... ok
> test_rgb_image (tests.unit.test_image.TestImageSubtypes) ... ok
> test_rgba_image (tests.unit.test_image.TestImageSubtypes) ... ok
> test_init (tests.unit.test_misc.AbstractFeatureSeriesConstructor) ... ok
> test_init (tests.unit.test_misc.AnnotationSeriesConstructor) ... ok
> test_init (tests.unit.test_misc.DecompositionSeriesConstructor) ... ok
> test_init_delayed_bands (tests.unit.test_misc.DecompositionSeriesConstructor)
> ... ok
> test_add_interval (tests.unit.test_misc.IntervalSeriesConstructor) ... ok
> test_init (tests.unit.test_misc.IntervalSeriesConstructor) ... ok
> test_add_spike_times (tests.unit.test_misc.UnitsTests) ... ok
> test_electrode_group (tests.unit.test_misc.UnitsTests) ... ok
> test_get_obs_intervals (tests.unit.test_misc.UnitsTests) ... ok
> test_get_spike_times (tests.unit.test_misc.UnitsTests) ... ok
> test_get_spike_times_interval (tests.unit.test_misc.UnitsTests) ... ok
> test_get_spike_times_multi (tests.unit.test_misc.UnitsTests) ... ok
> test_get_spike_times_multi_interval (tests.unit.test_misc.UnitsTests) ... ok
> test_init (tests.unit.test_misc.UnitsTests) ... ok
> test_obs_intervals (tests.unit.test_misc.UnitsTests) ... ok
> test_times (tests.unit.test_misc.UnitsTests) ... ok
> test_times_and_intervals (tests.unit.test_misc.UnitsTests) ... ok
> test_init (tests.unit.test_ogen.OptogeneticSeriesConstructor) ... ok
> test_init (tests.unit.test_ophys.CorrectedImageStackConstructor) ... ok
> test_init (tests.unit.test_ophys.DfOverFConstructor) ... ok
> test_init (tests.unit.test_ophys.FluorescenceConstructor) ... ok
> test_init (tests.unit.test_ophys.ImageSegmentationConstructor) ... ok
> test_init (tests.unit.test_ophys.MotionCorrectionConstructor) ... ok
> test_conversion_of_2d_image_mask_to_pixel_mask
> (tests.unit.test_ophys.PlaneSegmentationConstructor) ... ok
> test_conversion_of_2d_pixel_mask_to_image_mask
> (tests.unit.test_ophys.PlaneSegmentationConstructor) ... ok
> test_init (tests.unit.test_ophys.PlaneSegmentationConstructor) ... ok
> test_init_3d_image_mask (tests.unit.test_ophys.PlaneSegmentationConstructor)
> ... ok
> test_init_image_mask (tests.unit.test_ophys.PlaneSegmentationConstructor) ...
> ok
> test_init_pixel_mask (tests.unit.test_ophys.PlaneSegmentationConstructor) ...
> ok
> test_init_voxel_mask (tests.unit.test_ophys.PlaneSegmentationConstructor) ...
> ok
> test_init (tests.unit.test_ophys.RoiResponseSeriesConstructor) ... ok
> test_args (tests.unit.test_ophys.TwoPhotonSeriesConstructor) ... ok
> test_init (tests.unit.test_ophys.TwoPhotonSeriesConstructor) ... ok
> test_init (tests.unit.test_retinotopy.ImageRetinotopyConstructor) ... ok
> test_constructor (tests.unit.test_spec.NWBNamespaceTest) ... ok
> test_constructor (tests.unit.test_spec.NWBRefSpecTests) ... ok
> test_wrong_reference_type (tests.unit.test_spec.NWBRefSpecTests) ... ok
>
> ======================================================================
> FAIL: test_catch_dup_name (tests.unit.test_extension.TestCatchDupNS)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/tests/unit/test_extension.py",
> line 172, in test_catch_dup_name
> type_map.load_namespaces(os.path.join(self.tempdir, self.ns_path2))
> AssertionError: UserWarning not triggered
>
> ======================================================================
> FAIL: test_simple (tests.unit.test_file.TestCacheSpec)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/tests/unit/test_file.py",
> line 421, in test_simple
> nwbfile = reader.read()
> AssertionError: UserWarning not triggered
>
> ----------------------------------------------------------------------
> Ran 259 tests in 28.534s
>
> FAILED (failures=2)
> E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build; python3.9 -m unittest
> discover -v
> dh_auto_test: error: pybuild --test -i python{version} -p 3.9 returned exit
> code 13
The full build log is available from:
http://qa-logs.debian.net/2020/12/26/pynwb_1.2.1-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with me
so that we can identify if something relevant changed in the meantime.
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: pynwb
Source-Version: 2.5.0-1
Done: Yaroslav Halchenko <deb...@onerussian.com>
We believe that the bug you reported is fixed in the latest version of
pynwb, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 978...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Yaroslav Halchenko <deb...@onerussian.com> (supplier of updated pynwb package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 21 Dec 2023 21:19:32 -0500
Source: pynwb
Architecture: source
Version: 2.5.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Yaroslav Halchenko <deb...@onerussian.com>
Closes: 978257 1058966
Changes:
pynwb (2.5.0-1) unstable; urgency=medium
.
[ Andreas Tille ]
* Team upload.
* New upstream version
Closes: #978257
* Fix team address
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Standards-Version: 4.6.2 (routine-update)
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/changelog (routine-update)
* Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
* Drop python3-unittest2 from Build-Depends
Closes: #1058966
.
[ Yaroslav Halchenko ]
* Make build/run dependencies on h5py and hdmf versioned
* debian/control
- remove obsolete build-depends: python3-{six,ruamel.yaml}
- add testing build-depends: python3-{pytest,coverage}
* debian/patches added
- deb_no_dandi
- up_test_coverage_run
- up_test_file
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fcd5ea0a913a3488e70be842979295b602a66b6e 6328 pynwb_2.5.0-1.debian.tar.xz
5ddf42342a674e36ef2425fcf226eaa6c104d7b4 9367 pynwb_2.5.0-1_amd64.buildinfo
Checksums-Sha256:
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pynwb_2.5.0-1.dsc
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pynwb_2.5.0.orig.tar.gz
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pynwb_2.5.0-1.debian.tar.xz
6562c8fe111c55bc1d7b3ff48af6f08d3561b472a5cc18bf551b32d3043f9de1 9367
pynwb_2.5.0-1_amd64.buildinfo
Files:
d6a676c751d629fb2b0c2debe3d1c124 2156 python optional pynwb_2.5.0-1.dsc
7916d6671b024c9c99180af66912e5ce 620770 python optional pynwb_2.5.0.orig.tar.gz
68dd027de9ae8c8ced578646750341dc 6328 python optional
pynwb_2.5.0-1.debian.tar.xz
1b69ff4c1c6d258da23df681300e1ca6 9367 python optional
pynwb_2.5.0-1_amd64.buildinfo
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