Your message dated Thu, 14 Dec 2023 14:12:37 -0100
with message-id
<CAM8zJQsY8nPXZfzs2=mwumft+ef20qondgerwb1+-hyj1rb...@mail.gmail.com>
and subject line python-pysam ftbfs with Python 3.12
has caused the Debian Bug report #1057809,
regarding python-pysam ftbfs with Python 3.12
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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1057809: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1057809
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:python-pysam
Version: 0.22.0+ds-1
Severity: serious
Tags: sid trixie
User: debian-pyt...@lists.debian.org
Usertags: python3.12
python-pysam ftbfs with Python 3.12, didn't check for any follow-up errors:
[...]
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2
-Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -g -fwrapv -O2 -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/<<PKGBUILDDIR>>/pysam -I/usr/include -I/<<PKGBUILDDIR>>/samtools
-I/<<PKGBUILDDIR>>/samtools/lz4 -I/<<PKGBUILDDIR>>/bcftools
-I/<<PKGBUILDDIR>> -I/usr/include/python3.12 -c pysam/libchtslib.c -o
build/temp.linux-x86_64-cpython-312/pysam/libchtslib.o -Wno-unused
-Wno-strict-prototypes -Wno-sign-compare
-Wno-error=declaration-after-statement
pysam/libchtslib.c: In function ‘__pyx_f_5pysam_10libchtslib_set_verbosity’:
pysam/libchtslib.c:1387:32: error: ‘_PyCFrame’ has no member named
‘use_tracing’
1387 | (unlikely((tstate)->cframe->use_tracing) &&\
| ^~
pysam/libchtslib.c:958:43: note: in definition of macro ‘unlikely’
958 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
pysam/libchtslib.c:1426:15: note: in expansion of macro ‘__Pyx_IsTracing’
1426 | if (__Pyx_IsTracing(tstate, 1, 1)) {\
| ^~~~~~~~~~~~~~~
--- End Message ---
--- Begin Message ---
As noted above, python-pysam 0.22.0+ds-1+b1 built successfully with
cython3 0.29.36-3.1.
--- End Message ---
