Source: lmfit-py
Version: 1.2.2-2
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20231212 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules binary
> dh binary --buildsystem=pybuild
> dh_update_autotools_config -O--buildsystem=pybuild
> dh_autoreconf -O--buildsystem=pybuild
> dh_auto_configure -O--buildsystem=pybuild
> pybuild --configure -i python{version} -p "3.12 3.11"
> dh_auto_build -O--buildsystem=pybuild
> pybuild --build -i python{version} -p "3.12 3.11"
> I: pybuild plugin_pyproject:110: Building wheel for python3.12 with "build"
> module
> I: pybuild base:310: python3.12 -m build --skip-dependency-check
> --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit
> * Building wheel...
> running bdist_wheel
> running build
> running build_py
> creating build
> creating build/lib
> creating build/lib/lmfit
> copying lmfit/__init__.py -> build/lib/lmfit
> copying lmfit/confidence.py -> build/lib/lmfit
> copying lmfit/version.py -> build/lib/lmfit
> copying lmfit/models.py -> build/lib/lmfit
> copying lmfit/printfuncs.py -> build/lib/lmfit
> copying lmfit/_ampgo.py -> build/lib/lmfit
> copying lmfit/parameter.py -> build/lib/lmfit
> copying lmfit/minimizer.py -> build/lib/lmfit
> copying lmfit/jsonutils.py -> build/lib/lmfit
> copying lmfit/conf_emcee.py -> build/lib/lmfit
> copying lmfit/model.py -> build/lib/lmfit
> copying lmfit/lineshapes.py -> build/lib/lmfit
> installing to build/bdist.linux-x86_64/wheel
> running install
> running install_lib
> creating build/bdist.linux-x86_64
> creating build/bdist.linux-x86_64/wheel
> creating build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/__init__.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/confidence.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/version.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/models.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/parameter.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/minimizer.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/conf_emcee.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/model.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-x86_64/wheel/lmfit
> running install_egg_info
> running egg_info
> writing lmfit.egg-info/PKG-INFO
> writing dependency_links to lmfit.egg-info/dependency_links.txt
> writing requirements to lmfit.egg-info/requires.txt
> writing top-level names to lmfit.egg-info/top_level.txt
> reading manifest file 'lmfit.egg-info/SOURCES.txt'
> adding license file 'LICENSE'
> adding license file 'AUTHORS.txt'
> writing manifest file 'lmfit.egg-info/SOURCES.txt'
> Copying lmfit.egg-info to build/bdist.linux-x86_64/wheel/lmfit-1.2.2.egg-info
> running install_scripts
> creating build/bdist.linux-x86_64/wheel/lmfit-1.2.2.dist-info/WHEEL
> creating
> '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/.tmp-jqwutxyp/lmfit-1.2.2-py3-none-any.whl'
> and adding 'build/bdist.linux-x86_64/wheel' to it
> adding 'lmfit/__init__.py'
> adding 'lmfit/_ampgo.py'
> adding 'lmfit/conf_emcee.py'
> adding 'lmfit/confidence.py'
> adding 'lmfit/jsonutils.py'
> adding 'lmfit/lineshapes.py'
> adding 'lmfit/minimizer.py'
> adding 'lmfit/model.py'
> adding 'lmfit/models.py'
> adding 'lmfit/parameter.py'
> adding 'lmfit/printfuncs.py'
> adding 'lmfit/version.py'
> adding 'lmfit-1.2.2.dist-info/AUTHORS.txt'
> adding 'lmfit-1.2.2.dist-info/LICENSE'
> adding 'lmfit-1.2.2.dist-info/METADATA'
> adding 'lmfit-1.2.2.dist-info/WHEEL'
> adding 'lmfit-1.2.2.dist-info/top_level.txt'
> adding 'lmfit-1.2.2.dist-info/RECORD'
> removing build/bdist.linux-x86_64/wheel
> Successfully built lmfit-1.2.2-py3-none-any.whl
> I: pybuild plugin_pyproject:122: Unpacking wheel built for python3.12 with
> "installer" module
> I: pybuild plugin_pyproject:110: Building wheel for python3.11 with "build"
> module
> I: pybuild base:310: python3.11 -m build --skip-dependency-check
> --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit
> * Building wheel...
> running bdist_wheel
> running build
> running build_py
> copying lmfit/version.py -> build/lib/lmfit
> installing to build/bdist.linux-x86_64/wheel
> running install
> running install_lib
> creating build/bdist.linux-x86_64/wheel
> creating build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/__init__.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/confidence.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/version.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/models.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/parameter.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/minimizer.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/conf_emcee.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/model.py -> build/bdist.linux-x86_64/wheel/lmfit
> copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-x86_64/wheel/lmfit
> running install_egg_info
> running egg_info
> writing lmfit.egg-info/PKG-INFO
> writing dependency_links to lmfit.egg-info/dependency_links.txt
> writing requirements to lmfit.egg-info/requires.txt
> writing top-level names to lmfit.egg-info/top_level.txt
> reading manifest file 'lmfit.egg-info/SOURCES.txt'
> adding license file 'LICENSE'
> adding license file 'AUTHORS.txt'
> writing manifest file 'lmfit.egg-info/SOURCES.txt'
> Copying lmfit.egg-info to build/bdist.linux-x86_64/wheel/lmfit-1.2.2.egg-info
> running install_scripts
> creating build/bdist.linux-x86_64/wheel/lmfit-1.2.2.dist-info/WHEEL
> creating
> '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/.tmp-2oumaia8/lmfit-1.2.2-py3-none-any.whl'
> and adding 'build/bdist.linux-x86_64/wheel' to it
> adding 'lmfit/__init__.py'
> adding 'lmfit/_ampgo.py'
> adding 'lmfit/conf_emcee.py'
> adding 'lmfit/confidence.py'
> adding 'lmfit/jsonutils.py'
> adding 'lmfit/lineshapes.py'
> adding 'lmfit/minimizer.py'
> adding 'lmfit/model.py'
> adding 'lmfit/models.py'
> adding 'lmfit/parameter.py'
> adding 'lmfit/printfuncs.py'
> adding 'lmfit/version.py'
> adding 'lmfit-1.2.2.dist-info/AUTHORS.txt'
> adding 'lmfit-1.2.2.dist-info/LICENSE'
> adding 'lmfit-1.2.2.dist-info/METADATA'
> adding 'lmfit-1.2.2.dist-info/WHEEL'
> adding 'lmfit-1.2.2.dist-info/top_level.txt'
> adding 'lmfit-1.2.2.dist-info/RECORD'
> removing build/bdist.linux-x86_64/wheel
> Successfully built lmfit-1.2.2-py3-none-any.whl
> I: pybuild plugin_pyproject:122: Unpacking wheel built for python3.11 with
> "installer" module
> dh_auto_test -O--buildsystem=pybuild
> pybuild --test --test-pytest -i python{version} -p "3.12 3.11"
> I: pybuild pybuild:314: cp -r NIST_STRD examples
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build
> I: pybuild base:310: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build;
> python3.12 -m pytest tests
> ImportError while loading conftest
> '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build/tests/conftest.py'.
> tests/conftest.py:6: in <module>
> import lmfit
> lmfit/__init__.py:38: in <module>
> from .confidence import conf_interval, conf_interval2d
> lmfit/confidence.py:10: in <module>
> from .minimizer import MinimizerException
> lmfit/minimizer.py:41: in <module>
> from .parameter import Parameter, Parameters
> lmfit/parameter.py:10: in <module>
> from uncertainties import correlated_values, ufloat
> /usr/lib/python3/dist-packages/uncertainties/__init__.py:225: in <module>
> from .core import *
> /usr/lib/python3/dist-packages/uncertainties/core.py:22: in <module>
> from past.builtins import basestring
> /usr/lib/python3/dist-packages/past/builtins/__init__.py:54: in <module>
> from past.builtins.misc import (apply, chr, cmp, execfile, intern, oct,
> /usr/lib/python3/dist-packages/past/builtins/misc.py:45: in <module>
> from imp import reload
> E ModuleNotFoundError: No module named 'imp'
> E: pybuild pybuild:395: test: plugin pyproject failed with: exit code=4: cd
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build; python3.12 -m pytest
> tests
> I: pybuild pybuild:314: cp -r NIST_STRD examples
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build
> I: pybuild base:310: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build;
> python3.11 -m pytest tests
> ============================= test session starts
> ==============================
> platform linux -- Python 3.11.7, pytest-7.4.3, pluggy-1.3.0
> rootdir: /<<PKGBUILDDIR>>
> configfile: setup.cfg
> plugins: cov-4.1.0
> collected 654 items
>
> tests/test_1variable.py . [
> 0%]
> tests/test_NIST_Strd.py ........................... [
> 4%]
> tests/test_algebraic_constraint.py .... [
> 4%]
> tests/test_ampgo.py ............ [
> 6%]
> tests/test_basicfit.py . [
> 6%]
> tests/test_basinhopping.py ..... [
> 7%]
> tests/test_bounded_jacobian.py .. [
> 7%]
> tests/test_bounds.py . [
> 8%]
> tests/test_brute.py ............ [
> 9%]
> tests/test_builtin_models.py ....... [
> 11%]
> tests/test_confidence.py ............. [
> 12%]
> tests/test_covariance_matrix.py ..ssssssss. [
> 14%]
> tests/test_custom_independentvar.py . [
> 14%]
> tests/test_default_kws.py . [
> 14%]
> tests/test_dual_annealing.py ... [
> 15%]
> tests/test_itercb.py .................... [
> 18%]
> tests/test_jsonutils.py ................. [
> 21%]
> tests/test_least_squares.py ..... [
> 21%]
> tests/test_lineshapes.py ............................................... [
> 29%]
> .......................................... [
> 35%]
> tests/test_manypeaks_speed.py . [
> 35%]
> tests/test_max_nfev.py ........................... [
> 39%]
> tests/test_minimizer.py ............... [
> 42%]
> tests/test_model.py .................................................... [
> 50%]
> ........................................................................ [
> 61%]
> .....s....s............................................. [
> 69%]
> tests/test_model_saveload.py ...................... [
> 72%]
> tests/test_model_uncertainties.py ..... [
> 73%]
> tests/test_models.py ........ [
> 74%]
> tests/test_multidatasets.py . [
> 75%]
> tests/test_nose.py ...................s...... [
> 79%]
> tests/test_pandas.py .. [
> 79%]
> tests/test_parameter.py ................................................ [
> 86%]
> .......... [
> 88%]
> tests/test_parameters.py ............................... [
> 92%]
> tests/test_params_uvars.py ... [
> 93%]
> tests/test_printfuncs.py ............................s...... [
> 98%]
> tests/test_shgo.py ...... [
> 99%]
> tests/test_stepmodel.py ..
> [100%]
>
> =============================== warnings summary
> ===============================
> ../../../../../../usr/lib/python3/dist-packages/past/builtins/misc.py:45
> /usr/lib/python3/dist-packages/past/builtins/misc.py:45:
> DeprecationWarning: the imp module is deprecated in favour of importlib and
> slated for removal in Python 3.12; see the module's documentation for
> alternative uses
> from imp import reload
>
> tests/test_manypeaks_speed.py:15
>
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build/tests/test_manypeaks_speed.py:15:
> PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You
> can register custom marks to avoid this warning - for details, see
> https://docs.pytest.org/en/stable/how-to/mark.html
> @pytest.mark.flaky(max_runs=5)
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_model.py::test_make_params_valuetypes
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build/lmfit/model.py:686:
> ComplexWarning: Casting complex values to real discards the imaginary part
> dval = {'value': float(val)}
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee
> /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is
> deprecated to return a value that is not None from a test case (<bound method
> CommonMinimizerTest.test_emcee of <tests.test_nose.CommonMinimizerTest
> testMethod=test_emcee>>)
> return self.run(*args, **kwds)
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_bounds_length
> /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is
> deprecated to return a value that is not None from a test case (<bound method
> CommonMinimizerTest.test_emcee_bounds_length of
> <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_bounds_length>>)
> return self.run(*args, **kwds)
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_custom_pool
> /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is
> deprecated to return a value that is not None from a test case (<bound method
> CommonMinimizerTest.test_emcee_custom_pool of
> <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_custom_pool>>)
> return self.run(*args, **kwds)
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_float
> /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is
> deprecated to return a value that is not None from a test case (<bound method
> CommonMinimizerTest.test_emcee_float of <tests.test_nose.CommonMinimizerTest
> testMethod=test_emcee_float>>)
> return self.run(*args, **kwds)
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_init_with_chain
> /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is
> deprecated to return a value that is not None from a test case (<bound method
> CommonMinimizerTest.test_emcee_init_with_chain of
> <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_init_with_chain>>)
> return self.run(*args, **kwds)
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_method_kwarg
> /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is
> deprecated to return a value that is not None from a test case (<bound method
> CommonMinimizerTest.test_emcee_method_kwarg of
> <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_method_kwarg>>)
> return self.run(*args, **kwds)
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_ntemps
> /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is
> deprecated to return a value that is not None from a test case (<bound method
> CommonMinimizerTest.test_emcee_ntemps of <tests.test_nose.CommonMinimizerTest
> testMethod=test_emcee_ntemps>>)
> return self.run(*args, **kwds)
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_output
> /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is
> deprecated to return a value that is not None from a test case (<bound method
> CommonMinimizerTest.test_emcee_output of <tests.test_nose.CommonMinimizerTest
> testMethod=test_emcee_output>>)
> return self.run(*args, **kwds)
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_partial_bounds
> /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is
> deprecated to return a value that is not None from a test case (<bound method
> CommonMinimizerTest.test_emcee_partial_bounds of
> <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_partial_bounds>>)
> return self.run(*args, **kwds)
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_reuse_sampler
> /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is
> deprecated to return a value that is not None from a test case (<bound method
> CommonMinimizerTest.test_emcee_reuse_sampler of
> <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_reuse_sampler>>)
> return self.run(*args, **kwds)
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_seed
> /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is
> deprecated to return a value that is not None from a test case (<bound method
> CommonMinimizerTest.test_emcee_seed of <tests.test_nose.CommonMinimizerTest
> testMethod=test_emcee_seed>>)
> return self.run(*args, **kwds)
>
> .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_scalar_minimizers
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build/lmfit/minimizer.py:979:
> DeprecationWarning: 'maxiter' has been deprecated in favor of 'maxfun' and
> will be removed in SciPy 1.11.0.
> ret = scipy_minimize(self.penalty, variables, **fmin_kws)
>
> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
>
> ---------- coverage: platform linux, python 3.11.7-final-0 -----------
> Coverage HTML written to dir htmlcov
>
> =========== 642 passed, 12 skipped, 15 warnings in 130.09s (0:02:10)
> ===========
> I: pybuild pybuild:340: rm -fr
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build/NIST_STRD
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build/examples; find
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build -name "*.sav" -delete
> rm -fr -- /tmp/dh-xdg-rundir-mLXgU430
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12
> 3.11" returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2023/12/12/lmfit-py_1.2.2-2_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20231212;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20231212&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
