Bug#1056455: marked as done (python-anndata's autopkg tests fail with Python 3.12)

[Debian Bug Tracking System]

Your message dated Sun, 10 Dec 2023 11:48:28 +0530 (IST)
with message-id <301846684.62973.1702189108...@office.mailbox.org>
and subject line autopkgtests fixed for python-anndata
has caused the Debian Bug report #1056455,
regarding python-anndata's autopkg tests fail with Python 3.12
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1056455: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1056455
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Package: src:python-anndata
Version: 0.8.0-4
Severity: important
Tags: sid trixie
User: debian-pyt...@lists.debian.org
Usertags: python3.12

python-anndata's autopkg tests fail with Python 3.12:

[...]
433s Testing with python3.12:

435s ============================= test session starts ==============================

435s platform linux -- Python 3.12.0+, pytest-7.4.3, pluggy-1.3.0
435s rootdir: /tmp/autopkgtest.cRh5KZ/autopkgtest_tmp
435s plugins: cov-4.1.0
435s collected 909 items / 5 errors / 1 skipped
435s

435s ==================================== ERRORS ==================================== 435s _________________ ERROR collecting tests/test_anncollection.py _________________ 435s ImportError while importing test module '/usr/lib/python3/dist-packages/anndata/tests/test_anncollection.py'.

435s Hint: make sure your test modules/packages have valid Python names.
435s Traceback:
435s /usr/lib/python3.12/importlib/__init__.py:90: in import_module
435s     return _bootstrap._gcd_import(name[level:], package, level)

435s /usr/lib/python3/dist-packages/anndata/tests/test_anncollection.py:7: in <module>

435s     from sklearn.preprocessing import LabelEncoder
435s /usr/lib/python3/dist-packages/sklearn/__init__.py:82: in <module>
435s     from .base import clone
435s /usr/lib/python3/dist-packages/sklearn/base.py:17: in <module>
435s     from .utils import _IS_32BIT

435s /usr/lib/python3/dist-packages/sklearn/utils/__init__.py:21: in <module>

435s     from . import _joblib
435s /usr/lib/python3/dist-packages/sklearn/utils/_joblib.py:7: in <module>
435s     import joblib
435s /usr/lib/python3/dist-packages/joblib/__init__.py:113: in <module>
435s     from .memory import Memory, MemorizedResult, register_store_backend
435s /usr/lib/python3/dist-packages/joblib/memory.py:32: in <module>

435s from ._store_backends import StoreBackendBase, FileSystemStoreBackend 435s /usr/lib/python3/dist-packages/joblib/_store_backends.py:15: in <module>

435s     from .backports import concurrency_safe_rename
435s /usr/lib/python3/dist-packages/joblib/backports.py:22: in <module>
435s     import distutils  # noqa
435s E   ModuleNotFoundError: No module named 'distutils'

435s _________________ ERROR collecting tests/test_hdf5_backing.py __________________ 435s ImportError while importing test module '/usr/lib/python3/dist-packages/anndata/tests/test_hdf5_backing.py'.

435s Hint: make sure your test modules/packages have valid Python names.
435s Traceback:
435s /usr/lib/python3.12/importlib/__init__.py:90: in import_module
435s     return _bootstrap._gcd_import(name[level:], package, level)

435s /usr/lib/python3/dist-packages/anndata/tests/test_hdf5_backing.py:4: in <module>

435s     import joblib
435s /usr/lib/python3/dist-packages/joblib/__init__.py:113: in <module>
435s     from .memory import Memory, MemorizedResult, register_store_backend
435s /usr/lib/python3/dist-packages/joblib/memory.py:32: in <module>

435s from ._store_backends import StoreBackendBase, FileSystemStoreBackend 435s /usr/lib/python3/dist-packages/joblib/_store_backends.py:15: in <module>

435s     from .backports import concurrency_safe_rename
435s /usr/lib/python3/dist-packages/joblib/backports.py:22: in <module>
435s     import distutils  # noqa
435s E   ModuleNotFoundError: No module named 'distutils'

435s ___________________ ERROR collecting tests/test_obsmvarm.py ____________________ 435s ImportError while importing test module '/usr/lib/python3/dist-packages/anndata/tests/test_obsmvarm.py'.

435s Hint: make sure your test modules/packages have valid Python names.
435s Traceback:
435s /usr/lib/python3.12/importlib/__init__.py:90: in import_module
435s     return _bootstrap._gcd_import(name[level:], package, level)

435s /usr/lib/python3/dist-packages/anndata/tests/test_obsmvarm.py:1: in <module>

435s     import joblib
435s /usr/lib/python3/dist-packages/joblib/__init__.py:113: in <module>
435s     from .memory import Memory, MemorizedResult, register_store_backend
435s /usr/lib/python3/dist-packages/joblib/memory.py:32: in <module>

435s from ._store_backends import StoreBackendBase, FileSystemStoreBackend 435s /usr/lib/python3/dist-packages/joblib/_store_backends.py:15: in <module>

435s     from .backports import concurrency_safe_rename
435s /usr/lib/python3/dist-packages/joblib/backports.py:22: in <module>
435s     import distutils  # noqa
435s E   ModuleNotFoundError: No module named 'distutils'

435s ___________________ ERROR collecting tests/test_obspvarp.py ____________________ 435s ImportError while importing test module '/usr/lib/python3/dist-packages/anndata/tests/test_obspvarp.py'.

435s Hint: make sure your test modules/packages have valid Python names.
435s Traceback:
435s /usr/lib/python3.12/importlib/__init__.py:90: in import_module
435s     return _bootstrap._gcd_import(name[level:], package, level)

435s /usr/lib/python3/dist-packages/anndata/tests/test_obspvarp.py:2: in <module>

435s     import joblib
435s /usr/lib/python3/dist-packages/joblib/__init__.py:113: in <module>
435s     from .memory import Memory, MemorizedResult, register_store_backend
435s /usr/lib/python3/dist-packages/joblib/memory.py:32: in <module>

435s from ._store_backends import StoreBackendBase, FileSystemStoreBackend 435s /usr/lib/python3/dist-packages/joblib/_store_backends.py:15: in <module>

435s     from .backports import concurrency_safe_rename
435s /usr/lib/python3/dist-packages/joblib/backports.py:22: in <module>
435s     import distutils  # noqa
435s E   ModuleNotFoundError: No module named 'distutils'

435s _____________________ ERROR collecting tests/test_views.py _____________________ 435s ImportError while importing test module '/usr/lib/python3/dist-packages/anndata/tests/test_views.py'.

435s Hint: make sure your test modules/packages have valid Python names.
435s Traceback:
435s /usr/lib/python3.12/importlib/__init__.py:90: in import_module
435s     return _bootstrap._gcd_import(name[level:], package, level)

435s /usr/lib/python3/dist-packages/anndata/tests/test_views.py:4: in <module>

435s     import joblib
435s /usr/lib/python3/dist-packages/joblib/__init__.py:113: in <module>
435s     from .memory import Memory, MemorizedResult, register_store_backend
435s /usr/lib/python3/dist-packages/joblib/memory.py:32: in <module>

435s from ._store_backends import StoreBackendBase, FileSystemStoreBackend 435s /usr/lib/python3/dist-packages/joblib/_store_backends.py:15: in <module>

435s     from .backports import concurrency_safe_rename
435s /usr/lib/python3/dist-packages/joblib/backports.py:22: in <module>
435s     import distutils  # noqa
435s E   ModuleNotFoundError: No module named 'distutils'

--- End Message ---

--- Begin Message ---

The test failures were stemming from joblib which has been fixed. Closing.

Best,
Nilesh

--- End Message ---