Bug#1055447: htsjdk: FTBFS: 35741 tests completed, 9 failed, 10 skipped

[Pierre Gruet]

Control: targs -1 pending

Hi Andrius,

Thanks for the bug report. It was not easy to reproduce this one!

On Mon, 6 Nov 2023 14:35:05 +0200 Andrius Merkys <mer...@debian.org> wrote:
> Source: htsjdk
> Version: 3.0.5+dfsg-1
> Severity: serious
> Justification: FTBFS
> Tags: sid ftbfs
>
> Hi,
>
> I noticed htsjdk FTBFS in sid:
>
> Gradle Test Executor 1 finished executing tests.
> Results: FAILURE (35741 tests, 35722 successes, 9 failures, 10 skipped)
>
> 35741 tests completed, 9 failed, 10 skipped
> Finished generating test XML results (0.354 secs) into:

> Generating HTML test report...
> Finished generating test html results (0.42 secs) into:

> :testWithDefaultReference FAILED
> :testWithDefaultReference (Thread[Task worker for ':' Thread 2,5,main])
> completed. Took 11 mins 7.989 secs.
>
> FAILURE: Build failed with an exception.
>
> * What went wrong:
> Execution failed for task ':testWithDefaultReference'.
> > There were failing tests. See the report at:






>
> Andrius
>
>

Best,

--
Pierre

> /home/merkys/htsjdk-3.0.5+dfsg/build/test-results/testWithDefaultReference > /home/merkys/htsjdk-3.0.5+dfsg/build/reports/tests/testWithDefaultReference > file:///home/merkys/htsjdk-3.0.5+dfsg/build/reports/tests/testWithDefaultReference/index.html I found out some the failing tests were trying to create temporary files in directories that did not exist, possibly they rely on other tests to create them and tests are not run in the same order in every build? I am unsure how to address the test order so that it is always the same. Anyway, I added a check of the existence of directories before attempting to put anything inside them.

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