Your message dated Tue, 31 Oct 2023 20:40:47 +0000
with message-id <e1qxvxb-00fznz...@fasolo.debian.org>
and subject line Bug#1054701: fixed in fenics-dolfinx 1:0.7.1-1
has caused the Debian Bug report #1054701,
regarding fenics-dolfinx: FTBFS: Could not find a configuration file for
package "Catch2" that is compatible with requested version "2".
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1054701: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1054701
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: fenics-dolfinx
Version: 1:0.6.0-8
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20231027 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-complex'
> make[3]: Nothing to be done for 'preinstall'.
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-complex'
> Install the project...
> /usr/bin/cmake -P cmake_install.cmake
> -- Install configuration: "RelWithDebInfo"
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.6.0.13
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.6gcc13
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/defines.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/dolfin_common.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/dolfin_doc.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/IndexMap.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/log.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/loguru.hpp
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/sort.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/math.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/MPI.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/Scatterer.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/Table.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/Timer.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/TimeLogger.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/TimeLogManager.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/timing.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/utils.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/Constant.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/CoordinateElement.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/DirichletBC.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/DofMap.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/ElementDofLayout.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/Expression.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/FiniteElement.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/Form.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/Function.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/FunctionSpace.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/assembler.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/assemble_matrix_impl.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/assemble_scalar_impl.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/assemble_vector_impl.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/discreteoperators.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/dofmapbuilder.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/dolfin_fem.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/interpolate.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/petsc.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/sparsitybuild.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/fem/utils.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/geometry/BoundingBoxTree.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/geometry/gjk.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/geometry/dolfin_geometry.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/geometry/utils.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/graph/AdjacencyList.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/graph/dolfin_graph.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/graph/ordering.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/graph/partitioners.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/graph/partition.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/dolfin_io.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/ADIOS2Writers.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/cells.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/HDF5Interface.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/vtk_utils.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/VTKFile.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/XDMFFile.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/xdmf_function.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/xdmf_mesh.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/xdmf_meshtags.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/xdmf_read.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/io/xdmf_utils.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/dolfin_la.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/MatrixCSR.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/SparsityPattern.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/Vector.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/petsc.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/utils.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/la/slepc.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/dolfin_mesh.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/Mesh.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/Geometry.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/Topology.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/MeshTags.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/cell_types.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/generation.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/graphbuild.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/permutationcomputation.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/topologycomputation.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/mesh/utils.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/nls/dolfin_nls.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/nls/NewtonSolver.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/refinement/dolfin_refinement.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/refinement/plaza.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/refinement/refine.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/refinement/utils.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include/dolfinx/common/version.h
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_complex.pc
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf
> -- Installing: /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/hyperelasticity
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/hyperelasticity/hyperelasticity.py
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/hyperelasticity/main.cpp
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/hyperelasticity/CMakeLists.txt
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/interpolation_different_meshes
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/interpolation_different_meshes/main.cpp
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/interpolation_different_meshes/CMakeLists.txt
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson/poisson.py
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson/main.cpp
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson/CMakeLists.txt
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson_matrix_free
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson_matrix_free/poisson.py
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson_matrix_free/main.cpp
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/poisson_matrix_free/CMakeLists.txt
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/CMakeLists.txt
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/interpolation-io
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/interpolation-io/main.cpp
> -- Installing:
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/share/dolfinx/demo/interpolation-io/CMakeLists.txt
> ----------------------------------------------------------------------------
> DOLFINx has now been installed in
>
> /usr
>
> and demo programs have been installed in
>
> /usr/share/dolfinx/demo
>
> Don't forget to update your environment variables. This can be done
> easily using the helper file 'dolfinx.conf' which sets the appropriate
> variables (for users of the Bash shell).
>
> To update your environment variables, run the following command:
>
> source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf
>
> ----------------------------------------------------------------------------
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-complex'
> dh_numpy3 -a
> for build in complex; do \
> for v in python3.11; do \
> cd python; \
> PATH=/<<PKGBUILDDIR>>/debian/tmp-${build}/usr/bin:$PATH \
> PETSC_DIR=/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-${build}
> SLEPC_DIR=/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-${build} \
> CXXFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -fstack-clash-protection -Wformat
> -Werror=format-security -fcf-protection -isystem
> /<<PKGBUILDDIR>>/debian/tmp-${build}/usr/include" \
> VERBOSE=1 \
> $v setup.py build --build-base=build-${build} install
> --root=/<<PKGBUILDDIR>>/debian/tmp-${build} --install-layout=deb; \
> cd ..; \
> done; \
> done
> /usr/lib/python3/dist-packages/setuptools/__init__.py:84:
> _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are
> deprecated.
> !!
>
>
> ********************************************************************************
> Requirements should be satisfied by a PEP 517 installer.
> If you are using pip, you can try `pip install --use-pep517`.
>
> ********************************************************************************
>
> !!
> dist.fetch_build_eggs(dist.setup_requires)
> running build
> running build_py
> creating build-complex
> creating build-complex/lib.linux-x86_64-cpython-311
> creating build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/graph.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/pkgconfig.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/__init__.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/geometry.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/la.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/plot.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/common.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/log.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/mesh.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/jit.py -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> creating build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/function.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/assemble.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/__init__.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/petsc.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/dofmap.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/bcs.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/fem/forms.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> creating build-complex/lib.linux-x86_64-cpython-311/dolfinx/io
> copying dolfinx/io/utils.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/io
> copying dolfinx/io/__init__.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/io
> copying dolfinx/io/gmshio.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/io
> creating build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls
> copying dolfinx/nls/__init__.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls
> copying dolfinx/nls/petsc.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls
> creating build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers
> copying dolfinx/wrappers/__init__.py ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers
> copying dolfinx/py.typed -> build-complex/lib.linux-x86_64-cpython-311/dolfinx
> copying dolfinx/fem/py.typed ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem
> copying dolfinx/nls/py.typed ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls
> copying dolfinx/wrappers/caster_petsc.h ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers
> copying dolfinx/wrappers/MPICommWrapper.h ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers
> copying dolfinx/wrappers/array.h ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers
> copying dolfinx/wrappers/caster_mpi.h ->
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers
> running build_ext
> Re-run cmake no build system arguments
> -- The C compiler identification is GNU 13.2.0
> -- The CXX compiler identification is GNU 13.2.0
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working C compiler: /usr/bin/cc - skipped
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/c++ - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Found Python3: /usr/bin/python3.11 (found version "3.11.6") found
> components: Interpreter Development.Module
> -- Performing Test HAS_FLTO
> -- Performing Test HAS_FLTO - Success
> -- Found pybind11: /usr/lib/python3/dist-packages/pybind11/include (found
> version "2.11.1")
> -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found
> version "3.1")
> -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found
> version "3.1")
> -- Found MPI: TRUE (found version "3.1")
> -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0
> -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem
> -- Found boost_headers 1.74.0 at
> /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0
> -- Found boost_timer 1.74.0 at
> /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0
> -- [x] libboost_timer.so.1.74.0
> -- [ ] libboost_timer.a
> -- Adding boost_timer dependencies: chrono;headers
> -- Found boost_chrono 1.74.0 at
> /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0
> -- [x] libboost_chrono.so.1.74.0
> -- [ ] libboost_chrono.a
> -- Adding boost_chrono dependencies: headers
> -- Found boost_filesystem 1.74.0 at
> /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0
> -- [x] libboost_filesystem.so.1.74.0
> -- [ ] libboost_filesystem.a
> -- Adding boost_filesystem dependencies: headers
> -- Found Boost:
> /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found
> suitable version "1.74.0", minimum required is "1.70") found components:
> timer filesystem
> -- Found Python3: /usr/bin/python3.11 (found version "3.11.6") found
> components: Interpreter
> -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints
> -- HDF5: Using hdf5 compiler wrapper to determine C configuration
> -- Found HDF5:
> /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so
> (found version "1.10.10") found components: C
> -- HDF5_DIR: HDF5_DIR-NOTFOUND
> -- HDF5_DEFINITIONS:
> -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi
> -- HDF5_LIBRARIES:
> /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so
> -- HDF5_HL_LIBRARIES:
> -- HDF5_C_DEFINITIONS:
> -- HDF5_C_INCLUDE_DIR:
> -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi
> -- HDF5_C_LIBRARY:
> -- HDF5_C_LIBRARIES:
> /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so
> -- HDF5_C_HL_LIBRARY:
> -- HDF5_C_HL_LIBRARIES:
> -- Defined targets (if any):
> -- ... hdf5::hdf5
> -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
> -- Checking for one of the modules 'PETSc;petsc'
> -- Checking for one of the modules 'SLEPc;slepc'
> -- Performing Test HAVE_PEDANTIC
> -- Performing Test HAVE_PEDANTIC - Success
> -- Found petsc4py include directory at
> /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include
> -- Found mpi4py include directory at
> /usr/lib/python3/dist-packages/mpi4py/include
> -- Configuring done (7.8s)
> -- Generating done (0.0s)
> CMake Warning:
> Manually-specified variables were not used by the project:
>
> Python3_LIBRARIES
>
>
> -- Build files have been written to:
> /<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311
> Change Dir:
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> Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f
> Makefile -j3
> gmake[2]: Entering directory
> '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
> /usr/bin/cmake -S/<<PKGBUILDDIR>>/python
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> /<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311/CMakeFiles
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> gmake[3]: Entering directory
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> /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend
> gmake[4]: Entering directory
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> /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/python
> /<<PKGBUILDDIR>>/python
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> /<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311/CMakeFiles/cpp.dir/DependInfo.cmake
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> '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
> /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build
> gmake[4]: Entering directory
> '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
> [ 8%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o
> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK
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> /usr/include/python3.11 -isystem
> /usr/lib/python3/dist-packages/pybind11/include -isystem
> /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem
> /usr/lib/x86_64-linux-gnu/openmpi/include -isystem
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
> /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem
> /usr/include/hdf5/openmpi -isystem
> /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
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> CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o -c
> /<<PKGBUILDDIR>>/python/dolfinx/wrappers/common.cpp
> [ 16%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o
> [ 25%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o
> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK
> -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.6.0.13\" -DHAS_PTSCOTCH
> -DHAS_SLEPC -Dcpp_EXPORTS
> -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include
> -I/usr/lib/python3/dist-packages/mpi4py/include -isystem
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> /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem
> /usr/include/hdf5/openmpi -isystem
> /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2
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> /usr/include/python3.11 -isystem
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> /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem
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> CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -MF
> CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o.d -o
> CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -c
> /<<PKGBUILDDIR>>/python/dolfinx/wrappers/dolfinx.cpp
> [ 33%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o
> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK
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> /usr/include/python3.11 -isystem
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> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
> /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem
> /usr/include/hdf5/openmpi -isystem
> /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
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> CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o -c
> /<<PKGBUILDDIR>>/python/dolfinx/wrappers/geometry.cpp
> [ 41%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o
> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK
> -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.6.0.13\" -DHAS_PTSCOTCH
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> -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include
> -I/usr/lib/python3/dist-packages/mpi4py/include -isystem
> /usr/include/python3.11 -isystem
> /usr/lib/python3/dist-packages/pybind11/include -isystem
> /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem
> /usr/lib/x86_64-linux-gnu/openmpi/include -isystem
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
> /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem
> /usr/include/hdf5/openmpi -isystem
> /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
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> CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o -MF
> CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o.d -o
> CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o -c
> /<<PKGBUILDDIR>>/python/dolfinx/wrappers/graph.cpp
> [ 50%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o
> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK
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> -I/usr/lib/python3/dist-packages/mpi4py/include -isystem
> /usr/include/python3.11 -isystem
> /usr/lib/python3/dist-packages/pybind11/include -isystem
> /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem
> /usr/lib/x86_64-linux-gnu/openmpi/include -isystem
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
> /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem
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> CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o -c
> /<<PKGBUILDDIR>>/python/dolfinx/wrappers/io.cpp
> [ 58%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o
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> /<<PKGBUILDDIR>>/python/dolfinx/wrappers/la.cpp
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> CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o -c
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> CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o -MF
> CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o.d -o
> CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o -c
> /<<PKGBUILDDIR>>/python/dolfinx/wrappers/nls.cpp
> [ 91%] Building CXX object
> CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o
> /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK
> -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.6.0.13\" -DHAS_PTSCOTCH
> -DHAS_SLEPC -Dcpp_EXPORTS
> -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include
> -I/usr/lib/python3/dist-packages/mpi4py/include -isystem
> /usr/include/python3.11 -isystem
> /usr/lib/python3/dist-packages/pybind11/include -isystem
> /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem
> /usr/lib/x86_64-linux-gnu/openmpi/include -isystem
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
> /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/include -isystem
> /usr/include/hdf5/openmpi -isystem
> /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -isystem /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include -O3 -DNDEBUG
> -std=c++20 -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto
> -fno-fat-lto-objects -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT
> CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -MF
> CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o.d -o
> CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -c
> /<<PKGBUILDDIR>>/python/dolfinx/wrappers/refinement.cpp
> [100%] Linking CXX shared module
> /<<PKGBUILDDIR>>/python/build-complex/lib.linux-x86_64-cpython-311/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so
> /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1
> /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -fstack-clash-protection -Wformat
> -Werror=format-security -fcf-protection -isystem
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/include -O3 -DNDEBUG -flto
> -Wl,-z,relro -shared -o
> /<<PKGBUILDDIR>>/python/build-complex/lib.linux-x86_64-cpython-311/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so
> CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o
> CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o
> CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o
> CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o
> CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o
> CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o
> CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o
> CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o
> CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o
> CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o
> CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o
> -Wl,-rpath,/<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib
>
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.6.0.13
> /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14
> /usr/lib/x86_64-linux-gnu/libbasix.so.0.6.0.13
> /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0
> /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0
> /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so
> /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so
> /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so
> /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-complex/lib/libslepc_complex.so
> /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-complex/lib/libpetsc_complex.so
> lto-wrapper: warning: using serial compilation of 60 LTRANS jobs
> lto-wrapper: note: see the ‘-flto’ option documentation for more information
> /usr/bin/strip
> /<<PKGBUILDDIR>>/python/build-complex/lib.linux-x86_64-cpython-311/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so
> gmake[4]: Leaving directory
> '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
> [100%] Built target cpp
> gmake[3]: Leaving directory
> '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
> /usr/bin/cmake -E cmake_progress_start
> /<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311/CMakeFiles
> 0
> gmake[2]: Leaving directory
> '/<<PKGBUILDDIR>>/python/build-complex/temp.linux-x86_64-cpython-311'
>
> running install
> /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66:
> SetuptoolsDeprecationWarning: setup.py install is deprecated.
> !!
>
>
> ********************************************************************************
> Please avoid running ``setup.py`` directly.
> Instead, use pypa/build, pypa/installer or other
> standards-based tools.
>
> See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
> for details.
>
> ********************************************************************************
>
> !!
> self.initialize_options()
> running install_lib
> creating /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3
> creating /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages
> creating
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/graph.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> creating
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls/__init__.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls/petsc.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/nls/py.typed ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/pkgconfig.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so
> -> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> creating
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers
> copying
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers/caster_petsc.h ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers
> copying
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers/__init__.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers
> copying
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers/MPICommWrapper.h
> ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers/array.h
> ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers
> copying
> build-complex/lib.linux-x86_64-cpython-311/dolfinx/wrappers/caster_mpi.h ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/__init__.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/geometry.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/la.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/plot.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> creating
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/io/utils.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/io/__init__.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/io/gmshio.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io
> creating
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/function.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/assemble.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/__init__.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/petsc.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/dofmap.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/bcs.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/py.typed ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/fem/forms.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/common.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/log.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/mesh.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/jit.py ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> copying build-complex/lib.linux-x86_64-cpython-311/dolfinx/py.typed ->
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/graph.py
> to graph.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls/__init__.py
> to __init__.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls/petsc.py
> to petsc.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/pkgconfig.py
> to pkgconfig.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers/__init__.py
> to __init__.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/__init__.py
> to __init__.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/geometry.py
> to geometry.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/la.py
> to la.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/plot.py
> to plot.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io/utils.py
> to utils.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io/__init__.py
> to __init__.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io/gmshio.py
> to gmshio.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/function.py
> to function.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/assemble.py
> to assemble.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/__init__.py
> to __init__.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/petsc.py
> to petsc.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/dofmap.py
> to dofmap.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/bcs.py
> to bcs.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/forms.py
> to forms.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/common.py
> to common.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/log.py
> to log.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/mesh.py
> to mesh.cpython-311.pyc
> byte-compiling
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/jit.py
> to jit.cpython-311.pyc
> running install_egg_info
> running egg_info
> writing fenics_dolfinx.egg-info/PKG-INFO
> writing dependency_links to fenics_dolfinx.egg-info/dependency_links.txt
> writing requirements to fenics_dolfinx.egg-info/requires.txt
> writing top-level names to fenics_dolfinx.egg-info/top_level.txt
> reading manifest file 'fenics_dolfinx.egg-info/SOURCES.txt'
> writing manifest file 'fenics_dolfinx.egg-info/SOURCES.txt'
> Copying fenics_dolfinx.egg-info to
> /<<PKGBUILDDIR>>/debian/tmp-complex/usr/lib/python3/dist-packages/fenics_dolfinx-0.6.0.13.egg-info
> Skipping SOURCES.txt
> running install_scripts
> chrpath -d
> /<<PKGBUILDDIR>>/debian/tmp*/usr/lib/python*/dist-packages/dolfinx/*.so
> sed -i "s/-D_FORTIFY_SOURCE=2//g"
> /<<PKGBUILDDIR>>/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc
> sed -i "s|-DNDEBUG||g"
> /<<PKGBUILDDIR>>/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc
> if [ "x" != "xno" ]; then \
> case " mips64el hurd-i386 m68k sh4 " in \
> *\ amd64\ *) echo "ALL tests have been disabled on amd64";; \
> *) set -e; \
> export CTEST_OUTPUT_ON_FAILURE=1; \
> for build in real complex; do \
> echo "== testing $build number build =="; \
> builddir=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-${build}; \
> for mytest in test demo; do \
> echo "running tests from $mytest for $build build"; \
> testdir=${builddir}/${mytest}; \
> cd $testdir; \
> if [ "x" != "x" ]; then echo "set(CTEST_CUSTOM_TESTS_IGNORE )" >>
> CTestCustom.cmake; fi; \
> PETSC_DIR=/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-${build}
> SLEPC_DIR=/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-${build} cmake
> -DCMAKE_MODULE_PATH=/<<PKGBUILDDIR>>/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx
> \
>
>
> -DDOLFINX_DIR=/<<PKGBUILDDIR>>/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx
> \
>
> -DMPIEXEC_PARAMS:STRING="--oversubscribe" \
>
> ${testdir} ; \
> make all VERBOSE=1; \
> OMPI_ALLOW_RUN_AS_ROOT=1 OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 make
> test VERBOSE=1; \
> done; \
> cd /<<PKGBUILDDIR>>; \
> done; \
> esac; \
> fi
> == testing real number build ==
> running tests from test for real build
> -- The C compiler identification is GNU 13.2.0
> -- The CXX compiler identification is GNU 13.2.0
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working C compiler: /usr/bin/cc - skipped
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/c++ - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found
> version "3.1")
> -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found
> version "3.1")
> -- Found MPI: TRUE (found version "3.1")
> -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0
> -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem
> -- Found boost_headers 1.74.0 at
> /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0
> -- Found boost_timer 1.74.0 at
> /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0
> -- [x] libboost_timer.so.1.74.0
> -- [ ] libboost_timer.a
> -- Adding boost_timer dependencies: chrono;headers
> -- Found boost_chrono 1.74.0 at
> /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0
> -- [x] libboost_chrono.so.1.74.0
> -- [ ] libboost_chrono.a
> -- Adding boost_chrono dependencies: headers
> -- Found boost_filesystem 1.74.0 at
> /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0
> -- [x] libboost_filesystem.so.1.74.0
> -- [ ] libboost_filesystem.a
> -- Adding boost_filesystem dependencies: headers
> -- Found Boost:
> /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found
> suitable version "1.74.0", minimum required is "1.70") found components:
> timer filesystem
> -- Found Python3: /usr/bin/python3 (found version "3.11.6") found components:
> Interpreter
> -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints
> -- HDF5: Using hdf5 compiler wrapper to determine C configuration
> -- Found HDF5:
> /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so
> (found version "1.10.10") found components: C
> -- HDF5_DIR: HDF5_DIR-NOTFOUND
> -- HDF5_DEFINITIONS:
> -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi
> -- HDF5_LIBRARIES:
> /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so
> -- HDF5_HL_LIBRARIES:
> -- HDF5_C_DEFINITIONS:
> -- HDF5_C_INCLUDE_DIR:
> -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi
> -- HDF5_C_LIBRARY:
> -- HDF5_C_LIBRARIES:
> /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so
> -- HDF5_C_HL_LIBRARY:
> -- HDF5_C_HL_LIBRARIES:
> -- Defined targets (if any):
> -- ... hdf5::hdf5
> -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
> -- Checking for one of the modules 'PETSc;petsc'
> -- Looking for PETSC_USE_COMPLEX
> -- Looking for PETSC_USE_COMPLEX - not found
> -- Checking for one of the modules 'SLEPc;slepc'
> CMake Warning at CMakeLists.txt:35 (find_package):
> Could not find a configuration file for package "Catch2" that is compatible
> with requested version "2".
>
> The following configuration files were considered but not accepted:
>
> /usr/lib/cmake/Catch2/Catch2Config.cmake, version: 3.4.0
>
>
>
> -- Catch2 not found. Downloading.
> CMake Error at /usr/share/cmake-3.27/Modules/ExternalProject.cmake:2851
> (message):
> error: could not find git for clone of catch2-populate
> Call Stack (most recent call first):
> /usr/share/cmake-3.27/Modules/ExternalProject.cmake:4345
> (_ep_add_download_command)
> CMakeLists.txt:29 (ExternalProject_Add)
>
>
> -- Configuring incomplete, errors occurred!
>
> CMake Error at /usr/share/cmake-3.27/Modules/FetchContent.cmake:1650
> (message):
> CMake step for catch2 failed: 1
> Call Stack (most recent call first):
> /usr/share/cmake-3.27/Modules/FetchContent.cmake:1802:EVAL:2
> (__FetchContent_directPopulate)
> /usr/share/cmake-3.27/Modules/FetchContent.cmake:1802 (cmake_language)
> /usr/share/cmake-3.27/Modules/FetchContent.cmake:2016
> (FetchContent_Populate)
> CMakeLists.txt:44 (FetchContent_MakeAvailable)
>
>
> -- Configuring incomplete, errors occurred!
> make[1]: *** [debian/rules:188: override_dh_auto_install-arch] Error 1
The full build log is available from:
http://qa-logs.debian.net/2023/10/27/fenics-dolfinx_0.6.0-8_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20231027;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20231027&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: fenics-dolfinx
Source-Version: 1:0.7.1-1
Done: Drew Parsons <dpars...@debian.org>
We believe that the bug you reported is fixed in the latest version of
fenics-dolfinx, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1054...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <dpars...@debian.org> (supplier of updated fenics-dolfinx package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 31 Oct 2023 16:47:23 +0100
Source: fenics-dolfinx
Architecture: source
Version: 1:0.7.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Drew Parsons <dpars...@debian.org>
Closes: 1054701
Changes:
fenics-dolfinx (1:0.7.1-1) unstable; urgency=medium
.
* New upstream release
- applies debian patch include_std_bind.patch
* dolfinx 0.7 uses catch2 v3. Closes: #1054701.
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Files:
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