Your message dated Wed, 11 Oct 2023 15:12:24 +0200
with message-id <d5ef7b52-0d13-4ef3-b2b0-2ccbfb696...@debian.org>
and subject line Re: sarsen: FTBFS: dh_auto_test: error: pybuild --test
--test-pytest -i python{version} -p 3.11 returned exit code 13
has caused the Debian Bug report #1052817,
regarding sarsen: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i
python{version} -p 3.11 returned exit code 13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1052817: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1052817
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: sarsen
Version: 0.9.3+ds-2
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20230925 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules binary
> dh binary --with python3,numpy3 --buildsystem=pybuild
> dh_update_autotools_config -O--buildsystem=pybuild
> dh_autoreconf -O--buildsystem=pybuild
> dh_auto_configure -O--buildsystem=pybuild
> dh_auto_build -O--buildsystem=pybuild
> I: pybuild plugin_pyproject:110: Building wheel for python3.11 with "build"
> module
> I: pybuild base:291: python3.11 -m build --skip-dependency-check
> --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11
> * Building wheel...
> running bdist_wheel
> running build
> running build_py
> creating build
> creating build/lib
> creating build/lib/sarsen
> copying sarsen/datamodel.py -> build/lib/sarsen
> copying sarsen/sentinel1.py -> build/lib/sarsen
> copying sarsen/apps.py -> build/lib/sarsen
> copying sarsen/__main__.py -> build/lib/sarsen
> copying sarsen/version.py -> build/lib/sarsen
> copying sarsen/__init__.py -> build/lib/sarsen
> copying sarsen/scene.py -> build/lib/sarsen
> copying sarsen/geocoding.py -> build/lib/sarsen
> copying sarsen/radiometry.py -> build/lib/sarsen
> copying sarsen/chunking.py -> build/lib/sarsen
> copying sarsen/orbit.py -> build/lib/sarsen
> running egg_info
> creating sarsen.egg-info
> writing sarsen.egg-info/PKG-INFO
> writing dependency_links to sarsen.egg-info/dependency_links.txt
> writing entry points to sarsen.egg-info/entry_points.txt
> writing requirements to sarsen.egg-info/requires.txt
> writing top-level names to sarsen.egg-info/top_level.txt
> writing manifest file 'sarsen.egg-info/SOURCES.txt'
> reading manifest file 'sarsen.egg-info/SOURCES.txt'
> adding license file 'LICENSE'
> writing manifest file 'sarsen.egg-info/SOURCES.txt'
> installing to build/bdist.linux-x86_64/wheel
> running install
> running install_lib
> creating build/bdist.linux-x86_64
> creating build/bdist.linux-x86_64/wheel
> creating build/bdist.linux-x86_64/wheel/sarsen
> copying build/lib/sarsen/datamodel.py -> build/bdist.linux-x86_64/wheel/sarsen
> copying build/lib/sarsen/sentinel1.py -> build/bdist.linux-x86_64/wheel/sarsen
> copying build/lib/sarsen/apps.py -> build/bdist.linux-x86_64/wheel/sarsen
> copying build/lib/sarsen/__main__.py -> build/bdist.linux-x86_64/wheel/sarsen
> copying build/lib/sarsen/version.py -> build/bdist.linux-x86_64/wheel/sarsen
> copying build/lib/sarsen/__init__.py -> build/bdist.linux-x86_64/wheel/sarsen
> copying build/lib/sarsen/scene.py -> build/bdist.linux-x86_64/wheel/sarsen
> copying build/lib/sarsen/geocoding.py -> build/bdist.linux-x86_64/wheel/sarsen
> copying build/lib/sarsen/radiometry.py ->
> build/bdist.linux-x86_64/wheel/sarsen
> copying build/lib/sarsen/chunking.py -> build/bdist.linux-x86_64/wheel/sarsen
> copying build/lib/sarsen/orbit.py -> build/bdist.linux-x86_64/wheel/sarsen
> running install_egg_info
> Copying sarsen.egg-info to
> build/bdist.linux-x86_64/wheel/sarsen-0.9.3+ds.egg-info
> running install_scripts
> creating build/bdist.linux-x86_64/wheel/sarsen-0.9.3+ds.dist-info/WHEEL
> creating
> '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/.tmp-rvr8w5nz/sarsen-0.9.3+ds-py3-none-any.whl'
> and adding 'build/bdist.linux-x86_64/wheel' to it
> adding 'sarsen/__init__.py'
> adding 'sarsen/__main__.py'
> adding 'sarsen/apps.py'
> adding 'sarsen/chunking.py'
> adding 'sarsen/datamodel.py'
> adding 'sarsen/geocoding.py'
> adding 'sarsen/orbit.py'
> adding 'sarsen/radiometry.py'
> adding 'sarsen/scene.py'
> adding 'sarsen/sentinel1.py'
> adding 'sarsen/version.py'
> adding 'sarsen-0.9.3+ds.dist-info/LICENSE'
> adding 'sarsen-0.9.3+ds.dist-info/METADATA'
> adding 'sarsen-0.9.3+ds.dist-info/WHEEL'
> adding 'sarsen-0.9.3+ds.dist-info/entry_points.txt'
> adding 'sarsen-0.9.3+ds.dist-info/top_level.txt'
> adding 'sarsen-0.9.3+ds.dist-info/RECORD'
> removing build/bdist.linux-x86_64/wheel
> Successfully built sarsen-0.9.3+ds-py3-none-any.whl
> I: pybuild plugin_pyproject:122: Unpacking wheel built for python3.11 with
> "installer" module
> dh_auto_test -O--buildsystem=pybuild
> I: pybuild base:291: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build;
> python3.11 -m pytest tests
> ============================= test session starts
> ==============================
> platform linux -- Python 3.11.5, pytest-7.4.2, pluggy-1.3.0
> rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build
> collected 30 items
>
> tests/test_10_chunking.py ... [
> 10%]
> tests/test_10_datamodel.py . [
> 13%]
> tests/test_10_orbit.py .. [
> 20%]
> tests/test_10_scene.py ..F [
> 30%]
> tests/test_20_geocoding.py ... [
> 40%]
> tests/test_20_sentinel1.py ... [
> 50%]
> tests/test_30_radiometry.py F [
> 53%]
> tests/test_50_apps.py ssssssssssss [
> 93%]
> tests/test_60_main.py . [
> 96%]
> tests/test_90_sarsen.py .
> [100%]
>
> =================================== FAILURES
> ===================================
> ________________________ test_compute_dem_oriented_area
> ________________________
>
> dem_raster = <xarray.DataArray 'dem' (y: 360, x: 360)>
> [129600 values with dtype=float32]
> Coordinates:
> * x (x) float64....05
> spatial_ref int64 ...
> Attributes:
> AREA_OR_POINT: Area
> units: m
> long_name: elevation
>
> def test_compute_dem_oriented_area(dem_raster: xr.DataArray) -> None:
> dem_3d = scene.convert_to_dem_3d(dem_raster)
>
> > res = scene.compute_dem_oriented_area(dem_3d)
>
> tests/test_10_scene.py:39:
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> _
> sarsen/scene.py:110: in compute_dem_oriented_area
> cross_2 = xr.cross(dx2, dy2, dim="axis") / 2
> /usr/lib/python3/dist-packages/xarray/core/computation.py:1609: in cross
> c = apply_ufunc(
> /usr/lib/python3/dist-packages/xarray/core/computation.py:1197: in apply_ufunc
> return apply_dataarray_vfunc(
> /usr/lib/python3/dist-packages/xarray/core/computation.py:288: in
> apply_dataarray_vfunc
> args = deep_align(
> /usr/lib/python3/dist-packages/xarray/core/alignment.py:847: in deep_align
> aligned = align(
> /usr/lib/python3/dist-packages/xarray/core/alignment.py:783: in align
> aligner.align()
> /usr/lib/python3/dist-packages/xarray/core/alignment.py:568: in align
> self.align_indexes()
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> _
>
> self = <xarray.core.alignment.Aligner object at 0x7f6d18e7bbd0>
>
> def align_indexes(self) -> None:
> """Compute all aligned indexes and their corresponding coordinate
> variables."""
>
> aligned_indexes = {}
> aligned_index_vars = {}
> reindex = {}
> new_indexes = {}
> new_index_vars = {}
>
> for key, matching_indexes in self.all_indexes.items():
> matching_index_vars = self.all_index_vars[key]
> dims = {d for coord in matching_index_vars[0].values() for d in
> coord.dims}
> index_cls = key[1]
>
> if self.join == "override":
> joined_index = matching_indexes[0]
> joined_index_vars = matching_index_vars[0]
> need_reindex = False
> elif key in self.indexes:
> joined_index = self.indexes[key]
> joined_index_vars = self.index_vars[key]
> cmp_indexes = list(
> zip(
> [joined_index] + matching_indexes,
> [joined_index_vars] + matching_index_vars,
> )
> )
> need_reindex = self._need_reindex(dims, cmp_indexes)
> else:
> if len(matching_indexes) > 1:
> need_reindex = self._need_reindex(
> dims,
> list(zip(matching_indexes, matching_index_vars)),
> )
> else:
> need_reindex = False
> if need_reindex:
> if self.join == "exact":
> > raise ValueError(
> "cannot align objects with join='exact' where "
> "index/labels/sizes are not equal along "
> "these coordinates (dimensions): "
> + ", ".join(f"{name!r} {dims!r}" for name, dims
> in key[0])
> )
> E ValueError: cannot align objects with join='exact'
> where index/labels/sizes are not equal along these coordinates (dimensions):
> 'x' ('x',)
>
> /usr/lib/python3/dist-packages/xarray/core/alignment.py:415: ValueError
> ___________________________ test_compute_gamma_area
> ____________________________
>
> dem_ecef = <xarray.DataArray 'dem_3d' (axis: 3, y: 360, x: 360)>
> array([[[4639071.14581699, 4639064.72787912, 4639056.85736609, .... 0
> * y (y) float64 41.95 41.95 41.95 41.95 ... 42.05 42.05 42.05
> 42.05
> * axis (axis) int64 0 1 2
>
> def test_compute_gamma_area(dem_ecef: xr.DataArray) -> None:
> dem_direction = xr.DataArray()
> > res = radiometry.compute_gamma_area(dem_ecef, dem_direction)
>
> tests/test_30_radiometry.py:8:
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> _
> sarsen/radiometry.py:56: in compute_gamma_area
> dem_oriented_area = scene.compute_dem_oriented_area(dem_ecef)
> sarsen/scene.py:110: in compute_dem_oriented_area
> cross_2 = xr.cross(dx2, dy2, dim="axis") / 2
> /usr/lib/python3/dist-packages/xarray/core/computation.py:1609: in cross
> c = apply_ufunc(
> /usr/lib/python3/dist-packages/xarray/core/computation.py:1197: in apply_ufunc
> return apply_dataarray_vfunc(
> /usr/lib/python3/dist-packages/xarray/core/computation.py:288: in
> apply_dataarray_vfunc
> args = deep_align(
> /usr/lib/python3/dist-packages/xarray/core/alignment.py:847: in deep_align
> aligned = align(
> /usr/lib/python3/dist-packages/xarray/core/alignment.py:783: in align
> aligner.align()
> /usr/lib/python3/dist-packages/xarray/core/alignment.py:568: in align
> self.align_indexes()
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> _
>
> self = <xarray.core.alignment.Aligner object at 0x7f6d188a1450>
>
> def align_indexes(self) -> None:
> """Compute all aligned indexes and their corresponding coordinate
> variables."""
>
> aligned_indexes = {}
> aligned_index_vars = {}
> reindex = {}
> new_indexes = {}
> new_index_vars = {}
>
> for key, matching_indexes in self.all_indexes.items():
> matching_index_vars = self.all_index_vars[key]
> dims = {d for coord in matching_index_vars[0].values() for d in
> coord.dims}
> index_cls = key[1]
>
> if self.join == "override":
> joined_index = matching_indexes[0]
> joined_index_vars = matching_index_vars[0]
> need_reindex = False
> elif key in self.indexes:
> joined_index = self.indexes[key]
> joined_index_vars = self.index_vars[key]
> cmp_indexes = list(
> zip(
> [joined_index] + matching_indexes,
> [joined_index_vars] + matching_index_vars,
> )
> )
> need_reindex = self._need_reindex(dims, cmp_indexes)
> else:
> if len(matching_indexes) > 1:
> need_reindex = self._need_reindex(
> dims,
> list(zip(matching_indexes, matching_index_vars)),
> )
> else:
> need_reindex = False
> if need_reindex:
> if self.join == "exact":
> > raise ValueError(
> "cannot align objects with join='exact' where "
> "index/labels/sizes are not equal along "
> "these coordinates (dimensions): "
> + ", ".join(f"{name!r} {dims!r}" for name, dims
> in key[0])
> )
> E ValueError: cannot align objects with join='exact'
> where index/labels/sizes are not equal along these coordinates (dimensions):
> 'x' ('x',)
>
> /usr/lib/python3/dist-packages/xarray/core/alignment.py:415: ValueError
> =============================== warnings summary
> ===============================
> ../../../../../../usr/lib/python3/dist-packages/xarray_sentinel/esa_safe.py:7
> /usr/lib/python3/dist-packages/xarray_sentinel/esa_safe.py:7:
> DeprecationWarning: pkg_resources is deprecated as an API. See
> https://setuptools.pypa.io/en/latest/pkg_resources.html
> import pkg_resources
>
> tests/test_20_geocoding.py::test_secant_method
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/sarsen/geocoding.py:46:
> RuntimeWarning: invalid value encountered in divide
> t_prev, t_curr = t_curr, t_curr - np.where(q != 0, p / q, 0) # type:
> ignore
>
> tests/test_20_sentinel1.py::test_Sentinel1SarProduct[data_path0-IW/VV]
> tests/test_20_sentinel1.py::test_Sentinel1SarProduct[data_path0-IW/VV]
> tests/test_20_sentinel1.py::test_Sentinel1SarProduct[data_path0-IW/VV]
> tests/test_20_sentinel1.py::test_Sentinel1SarProduct[data_path0-IW/VV]
> tests/test_20_sentinel1.py::test_Sentinel1SarProduct[data_path0-IW/VV]
> tests/test_20_sentinel1.py::test_Sentinel1SarProduct[data_path0-IW/VV]
> tests/test_20_sentinel1.py::test_Sentinel1SarProduct[data_path0-IW/VV]
> /usr/lib/python3/dist-packages/rioxarray/_io.py:1132:
> NotGeoreferencedWarning: Dataset has no geotransform, gcps, or rpcs. The
> identity matrix will be returned.
> warnings.warn(str(rio_warning.message), type(rio_warning.message)) #
> type: ignore
>
> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
> =========================== short test summary info
> ============================
> FAILED tests/test_10_scene.py::test_compute_dem_oriented_area - ValueError:
> c...
> FAILED tests/test_30_radiometry.py::test_compute_gamma_area - ValueError:
> can...
> ============ 2 failed, 16 passed, 12 skipped, 9 warnings in 59.08s
> =============
> E: pybuild pybuild:395: test: plugin pyproject failed with: exit code=1: cd
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; python3.11 -m pytest tests
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11
> returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2023/09/25/sarsen_0.9.3+ds-2_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230925;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230925&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Version: 2023.09.0-1
--- End Message ---
