Your message dated Sun, 01 Oct 2023 15:55:59 +0000
with message-id <e1qmynx-0005tm...@fasolo.debian.org>
and subject line Bug#1053274: fixed in ont-fast5-api 4.1.1+dfsg-3
has caused the Debian Bug report #1053274,
regarding ont-fast5-api: test_001_read_events fails with h5py 3.9.0:
'AstypeWrapper' object does not support the context manager protocol
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1053274: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1053274
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: ont-fast5-api
Version: 4.1.1+dfsg-2
Severity: serious
Justification: debci
h5py 3.9.0 is triggering an error ont-fast5-api debci tests,
https://ci.debian.net/data/autopkgtest/testing/amd64/o/ont-fast5-api/38279479/log.gz
33s ERROR: test_001_read_events
(test.test_event_detection_tools.TestEventDetectionTools.test_001_read_events)
33s ----------------------------------------------------------------------
33s Traceback (most recent call last):
33s File
"/tmp/autopkgtest-lxc.jqw02kin/downtmp/autopkgtest_tmp/test/test_event_detection_tools.py",
line 26, in test_001_read_events
33s data, attrs = fh.get_event_data(time_in_seconds=True)
33s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
33s File
"/usr/lib/python3/dist-packages/ont_fast5_api/analysis_tools/event_detection.py",
line 84, in get_event_data
33s with dataset.astype(np.dtype(descr)):
33s TypeError: 'AstypeWrapper' object does not support the context manager
protocol
33s
33s ----------------------------------------------------------------------
33s Ran 76 tests in 1.416s
33s
33s FAILED (errors=1, skipped=5)
--- End Message ---
--- Begin Message ---
Source: ont-fast5-api
Source-Version: 4.1.1+dfsg-3
Done: Nilesh Patra <nil...@debian.org>
We believe that the bug you reported is fixed in the latest version of
ont-fast5-api, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1053...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <nil...@debian.org> (supplier of updated ont-fast5-api package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 01 Oct 2023 21:03:26 +0530
Source: ont-fast5-api
Architecture: source
Version: 4.1.1+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nil...@debian.org>
Closes: 1053274
Changes:
ont-fast5-api (4.1.1+dfsg-3) unstable; urgency=medium
.
* Add patch to fix FTBFS with new h5py 3.9 (Closes: #1053274)
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