Bug#1042310: marked as done (python-cobra: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13)

[Debian Bug Tracking System]

Your message dated Fri, 15 Sep 2023 19:26:22 +0000
with message-id <e1qhesm-00cdhs...@fasolo.debian.org>
and subject line Bug#1042310: fixed in python-cobra 0.26.3-1
has caused the Debian Bug report #1042310,
regarding python-cobra: FTBFS: dh_auto_test: error: pybuild --test 
--test-pytest -i python{version} -p 3.11 returned exit code 13
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1042310: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1042310
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Source: python-cobra
Version: 0.26.2-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20230726 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
>  debian/rules binary
> dh binary --with python3 --buildsystem=pybuild
>    dh_update_autotools_config -O--buildsystem=pybuild
>    dh_autoreconf -O--buildsystem=pybuild
>    dh_auto_configure -O--buildsystem=pybuild
> I: pybuild base:240: python3.11 setup.py config 
> running config
>    dh_auto_build -O--buildsystem=pybuild
> I: pybuild base:240: /usr/bin/python3 setup.py build 
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra
> copying src/cobra/__init__.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra
> copying src/cobra/exceptions.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
> copying src/cobra/io/sbml.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
> copying src/cobra/io/yaml.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
> copying src/cobra/io/__init__.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
> copying src/cobra/io/json.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
> copying src/cobra/io/mat.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
> copying src/cobra/io/dict.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
> copying src/cobra/summary/reaction_summary.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
> copying src/cobra/summary/__init__.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
> copying src/cobra/summary/metabolite_summary.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
> copying src/cobra/summary/summary.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
> copying src/cobra/summary/model_summary.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/summary
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
> copying src/cobra/medium/__init__.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
> copying src/cobra/medium/minimal_medium.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
> copying src/cobra/medium/annotations.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
> copying src/cobra/medium/boundary_types.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/medium
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/species.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/singleton.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/solution.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/group.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/object.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/gene.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/__init__.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/model.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/configuration.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/dictlist.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/formula.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/reaction.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> copying src/cobra/core/metabolite.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core
> creating 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/gapfilling.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/__init__.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/deletion.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/moma.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/loopless.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/phenotype_phase_plane.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/fastcc.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/helpers.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/room.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/geometric.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/reaction.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/variability.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> copying src/cobra/flux_analysis/parsimonious.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis
> creating 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
> copying src/cobra/manipulation/modify.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
> copying src/cobra/manipulation/__init__.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
> copying src/cobra/manipulation/delete.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
> copying src/cobra/manipulation/annotate.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
> copying src/cobra/manipulation/validate.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
> copying src/cobra/sampling/__init__.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
> copying src/cobra/sampling/sampling.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
> copying src/cobra/sampling/hr_sampler.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
> copying src/cobra/sampling/core.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
> copying src/cobra/sampling/optgp.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
> copying src/cobra/sampling/achr.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/sampling
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
> copying src/cobra/data/__init__.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
> copying src/cobra/util/util.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
> copying src/cobra/util/context.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
> copying src/cobra/util/__init__.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
> copying src/cobra/util/array.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
> copying src/cobra/util/solver.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
> copying src/cobra/util/process_pool.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
> copying src/cobra/io/web/abstract_model_repository.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
> copying src/cobra/io/web/bigg_models_repository.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
> copying src/cobra/io/web/__init__.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
> copying src/cobra/io/web/load.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
> copying src/cobra/io/web/cobrapy_repository.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
> copying src/cobra/io/web/biomodels_repository.py -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io/web
> copying src/cobra/data/mini.yml -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
> copying src/cobra/data/mini.mat -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
> copying src/cobra/data/mini.json -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
> copying src/cobra/data/iJO1366.xml.gz -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
> copying src/cobra/data/salmonella.xml.gz -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
> copying src/cobra/data/textbook.xml.gz -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
> copying src/cobra/data/mini_cobra.xml -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/data
> copying src/cobra/io/schema_v1.json -> 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/io
>    dh_auto_test -O--buildsystem=pybuild
> I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build; 
> python3.11 -m pytest tests
> ============================= test session starts 
> ==============================
> platform linux -- Python 3.11.4, pytest-7.4.0, pluggy-1.2.0
> benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False 
> min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 
> warmup=False warmup_iterations=100000)
> rootdir: /<<PKGBUILDDIR>>
> configfile: tox.ini
> plugins: mock-3.11.1, benchmark-3.2.2, anyio-3.7.0
> collected 549 items
> 
> tests/test_core/test_configuration.py ......                             [  
> 1%]
> tests/test_core/test_core_reaction.py ..........ss...................... [  
> 7%]
> ...................x......                                               [ 
> 12%]
> tests/test_core/test_dictlist.py ......................                  [ 
> 16%]
> tests/test_core/test_formula.py .....                                    [ 
> 16%]
> tests/test_core/test_gene.py .                                           [ 
> 17%]
> tests/test_core/test_gpr.py .....................x..x................... [ 
> 25%]
> ..........................                                               [ 
> 29%]
> tests/test_core/test_group.py ..                                         [ 
> 30%]
> tests/test_core/test_metabolite.py ...ss.ss.                             [ 
> 31%]
> tests/test_core/test_model.py ............................F.....F.....F. [ 
> 39%]
> .......F...s..s.ss.                                                      [ 
> 42%]
> tests/test_core/test_solution.py .ss                                     [ 
> 43%]
> tests/test_flux_analysis/test_deletion.py ..FFsF...F                     [ 
> 45%]
> tests/test_flux_analysis/test_fastcc.py FFFF                             [ 
> 46%]
> tests/test_flux_analysis/test_geometric.py FF                            [ 
> 46%]
> tests/test_flux_analysis/test_moma.py F                                  [ 
> 46%]
> tests/test_flux_analysis/test_parsimonious.py FFatal Python error: Aborted
> 
> Current thread 0x00007efe61364040 (most recent call first):
>   File "/usr/lib/python3/dist-packages/swiglpk/swiglpk.py", line 351 in 
> glp_set_obj_coef
>   File "/usr/lib/python3/dist-packages/optlang/glpk_interface.py", line 629 
> in objective
>   File 
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py", 
> line 206 in reset
>   File 
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/util/context.py", 
> line 42 in reset
>   File 
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/cobra/core/model.py", 
> line 1413 in __exit__
>   File 
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_parsimonious.py",
>  line 24 in test_pfba
>   File "/usr/lib/python3/dist-packages/_pytest/python.py", line 194 in 
> pytest_pyfunc_call
>   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 80 in 
> _multicall
>   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 112 in 
> _hookexec
>   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 433 in __call__
>   File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1788 in 
> runtest
>   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 169 in 
> pytest_runtest_call
>   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 80 in 
> _multicall
>   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 112 in 
> _hookexec
>   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 433 in __call__
>   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 262 in 
> <lambda>
>   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341 in 
> from_call
>   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 261 in 
> call_runtest_hook
>   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 222 in 
> call_and_report
>   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 133 in 
> runtestprotocol
>   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 114 in 
> pytest_runtest_protocol
>   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 80 in 
> _multicall
>   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 112 in 
> _hookexec
>   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 433 in __call__
>   File "/usr/lib/python3/dist-packages/_pytest/main.py", line 349 in 
> pytest_runtestloop
>   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 80 in 
> _multicall
>   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 112 in 
> _hookexec
>   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 433 in __call__
>   File "/usr/lib/python3/dist-packages/_pytest/main.py", line 324 in _main
>   File "/usr/lib/python3/dist-packages/_pytest/main.py", line 270 in 
> wrap_session
>   File "/usr/lib/python3/dist-packages/_pytest/main.py", line 317 in 
> pytest_cmdline_main
>   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 80 in 
> _multicall
>   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 112 in 
> _hookexec
>   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 433 in __call__
>   File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 166 
> in main
>   File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 189 
> in console_main
>   File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 5 in <module>
>   File "<frozen runpy>", line 88 in _run_code
>   File "<frozen runpy>", line 198 in _run_module_as_main
> 
> Extension modules: swiglpk._swiglpk, numpy.core._multiarray_umath, 
> numpy.core._multiarray_tests, numpy.linalg._umath_linalg, 
> numpy.fft._pocketfft_internal, numpy.random._common, 
> numpy.random.bit_generator, numpy.random._bounded_integers, 
> numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, 
> numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, 
> scipy._lib._ccallback_c, scipy.sparse._sparsetools, _csparsetools, 
> scipy.sparse._csparsetools, scipy.sparse.linalg._isolve._iterative, 
> scipy.linalg._fblas, scipy.linalg._flapack, 
> scipy.linalg._cythonized_array_utils, scipy.linalg._flinalg, 
> scipy.linalg._solve_toeplitz, scipy.linalg._matfuncs_sqrtm_triu, 
> scipy.linalg.cython_lapack, scipy.linalg.cython_blas, 
> scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, 
> scipy.sparse.linalg._dsolve._superlu, 
> scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.csgraph._tools, 
> scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, 
> scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, 
> scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, 
> scipy.optimize._minpack2, scipy.optimize._group_columns, 
> scipy._lib.messagestream, scipy.optimize._trlib._trlib, 
> numpy.linalg.lapack_lite, scipy.optimize._lbfgsb, _moduleTNC, 
> scipy.optimize._moduleTNC, scipy.optimize._cobyla, scipy.optimize._slsqp, 
> scipy.optimize._minpack, scipy.optimize._lsq.givens_elimination, 
> scipy.optimize._zeros, scipy.optimize.__nnls, 
> scipy.optimize._highs.cython.src._highs_wrapper, 
> scipy.optimize._highs._highs_wrapper, 
> scipy.optimize._highs.cython.src._highs_constants, 
> scipy.optimize._highs._highs_constants, scipy.linalg._interpolative, 
> scipy.optimize._bglu_dense, scipy.optimize._lsap, scipy.spatial._ckdtree, 
> scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, 
> scipy.spatial._hausdorff, scipy.special._ufuncs_cxx, scipy.special._ufuncs, 
> scipy.special._specfun, scipy.special._comb, scipy.special._ellip_harm_2, 
> scipy.spatial.transform._rotation, scipy.optimize._direct, 
> pandas._libs.tslibs.np_datetime, pandas._libs.tslibs.dtypes, 
> pandas._libs.tslibs.base, pandas._libs.tslibs.nattype, 
> pandas._libs.tslibs.timezones, pandas._libs.tslibs.tzconversion, 
> pandas._libs.tslibs.ccalendar, pandas._libs.tslibs.fields, 
> pandas._libs.tslibs.timedeltas, pandas._libs.tslibs.timestamps, 
> pandas._libs.properties, pandas._libs.tslibs.offsets, 
> pandas._libs.tslibs.parsing, pandas._libs.tslibs.conversion, 
> pandas._libs.tslibs.period, pandas._libs.tslibs.vectorized, 
> pandas._libs.ops_dispatch, pandas._libs.missing, pandas._libs.hashtable, 
> pandas._libs.algos, pandas._libs.interval, pandas._libs.tslib, 
> pandas._libs.lib, pandas._libs.hashing, pandas._libs.ops, 
> pandas._libs.arrays, pandas._libs.index, pandas._libs.join, 
> pandas._libs.sparse, pandas._libs.reduction, pandas._libs.indexing, 
> pandas._libs.internals, pandas._libs.writers, 
> pandas._libs.window.aggregations, pandas._libs.window.indexers, 
> pandas._libs.reshape, pandas._libs.tslibs.strptime, pandas._libs.groupby, 
> pandas._libs.testing, pandas._libs.parsers, pandas._libs.json, 
> simplejson._speedups, scipy.io.matlab._mio_utils, scipy.io.matlab._streams, 
> scipy.io.matlab._mio5_utils, _libsbml, _ruamel_yaml, _brotli, pvectorc 
> (total: 120)
> Aborted
> E: pybuild pybuild:388: test: plugin distutils failed with: exit code=134: cd 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cobra/build; python3.11 -m pytest 
> tests
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 
> returned exit code 13


The full build log is available from:
http://qa-logs.debian.net/2023/07/26/python-cobra_0.26.2-1_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230726;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230726&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

--- End Message ---

--- Begin Message ---

Source: python-cobra
Source-Version: 0.26.3-1
Done: Nilesh Patra <nil...@debian.org>

We believe that the bug you reported is fixed in the latest version of
python-cobra, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1042...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Nilesh Patra <nil...@debian.org> (supplier of updated python-cobra package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Fri, 15 Sep 2023 23:50:34 +0530
Source: python-cobra
Architecture: source
Version: 0.26.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nil...@debian.org>
Closes: 1042310
Changes:
 python-cobra (0.26.3-1) unstable; urgency=medium
 .
   [ Étienne Mollier ]
   * Team upload.
   * New upstream version 0.26.3
   * mathjax.patch: unfuzz.
   * do-not-seek-for-name.patch: unfuzz.
   * numpy_1.24.patch: delete; applied upstream.
   * d/control: remove dependency on obsolete package version.
 .
   [ Nilesh Patra ]
   * Add Versioned B-D on optlang and swiglpk
     (Closes: #1042310)
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python-cobra_0.26.3.orig.tar.gz
 3a6d4a65e0a8765fd68f159fb164f2f9384a13ae 8296 
python-cobra_0.26.3-1.debian.tar.xz
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python-cobra_0.26.3-1_amd64.buildinfo
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python-cobra_0.26.3-1_amd64.buildinfo
Files:
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 e87de56df697a62506d80192aa7e0fdb 3751284 python optional 
python-cobra_0.26.3.orig.tar.gz
 25ef22a61916549582163c4aa5fbbcf7 8296 python optional 
python-cobra_0.26.3-1.debian.tar.xz
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python-cobra_0.26.3-1_amd64.buildinfo

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--- End Message ---