Your message dated Tue, 12 Sep 2023 15:55:23 +0000
with message-id <e1qg5jx-00e4f9...@fasolo.debian.org>
and subject line Bug#1037905: fixed in yade 2023.02a-3
has caused the Debian Bug report #1037905,
regarding yade: ftbfs with GCC-13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1037905: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1037905
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:yade
Version: 2023.02a-1
Severity: normal
Tags: sid trixie
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-13
[This bug is targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-13/g++-13, but succeeds to build with gcc-12/g++-12. The
severity of this report will be raised before the trixie release.
The full build log can be found at:
http://qa-logs.debian.net/2023/05/22/logs/yade_2023.02a-1_unstable_gccexp.log
The last lines of the build log are at the end of this report.
To build with GCC 13, either set CC=gcc-13 CXX=g++-13 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-13/porting_to.html
[...]
cpu cores : 4
apicid : 7
initial apicid : 7
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov
pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm
constant_tsc rep_good nopl xtopology nonstop_tsc cpuid tsc_known_freq pni
pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 x2apic movbe popcnt
tsc_deadline_timer aes xsave avx f16c rdrand hypervisor lahf_lm abm
3dnowprefetch invpcid_single pti fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms
invpcid mpx avx512f avx512dq rdseed adx smap clflushopt clwb avx512cd avx512bw
avx512vl xsaveopt xsavec xgetbv1 xsaves ida arat pku ospke
bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds
swapgs itlb_multihit mmio_stale_data retbleed
bogomips : 5000.01
clflush size : 64
cache_alignment : 64
address sizes : 46 bits physical, 48 bits virtual
power management:
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -B/<<PKGBUILDDIR>>/debian/build-double
cd debian/build-double && make -j1 "INSTALL=install
--strip-program=true" VERBOSE=1
make[2]: Entering directory '/<<PKGBUILDDIR>>/debian/build-double'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/debian/build-double
--check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start
/<<PKGBUILDDIR>>/debian/build-double/CMakeFiles
/<<PKGBUILDDIR>>/debian/build-double//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<PKGBUILDDIR>>/debian/build-double'
make -f CMakeFiles/post_vtk.dir/build.make CMakeFiles/post_vtk.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/debian/build-double'
cd /<<PKGBUILDDIR>>/debian/build-double && /usr/bin/cmake -E cmake_depends
"Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>
/<<PKGBUILDDIR>>/debian/build-double /<<PKGBUILDDIR>>/debian/build-double
/<<PKGBUILDDIR>>/debian/build-double/CMakeFiles/post_vtk.dir/DependInfo.cmake
--color=
make[4]: Leaving directory '/<<PKGBUILDDIR>>/debian/build-double'
make -f CMakeFiles/post_vtk.dir/build.make CMakeFiles/post_vtk.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/debian/build-double'
[ 0%] Building CXX object
CMakeFiles/post_vtk.dir/postprocessing/vtk/VTKRecorder.cpp.o
/usr/bin/c++ -DBOOST_LOG_DYN_LINK -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5
-DQT_NO_KEYWORDS -DSUITESPARSE_VERSION_4 -DYADE_BOOST_LOG -DYADE_COMPLEX_MP
-DYADE_FEM -DYADE_LS_DEM -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES
-DYADE_REAL_BIT=64 -DYADE_REAL_DEC=15 -Dkiss_fft_scalar=double
-Dpost_vtk_EXPORTS -I/<<PKGBUILDDIR>> -I/usr/include/python3.11
-I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/eigen3
-I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include
-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore
-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++
-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets
-I/usr/include/x86_64-linux-gnu/qt5/QtGui
-I/usr/include/x86_64-linux-gnu/qt5/QtXml
-I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include/GL
-I/usr/include/suitesparse -I/usr/lib/x86_64-linux-gnu/openmpi/include
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi
-I/usr/lib/python3/dist-packages/mpi4py/include -I/<<PKGBUILDD
IR>>/debian/build-double -I/<<PKGBUILDDIR>>/debian/build-double/pkg/pfv
-isystem /usr/include/vtk-9.1 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -g0 -Wdate-time
-D_FORTIFY_SOURCE=2 -Werror -Wformat -Wformat-security -Wformat-nonliteral
-Wall -Wextra -Wnarrowing -Wreturn-type -Wuninitialized -Wfloat-conversion
-Wcast-align -Wdisabled-optimization -Wtrampolines -Wpointer-arith
-Wswitch-bool -Wwrite-strings -Wnon-virtual-dtor -Wreturn-local-addr
-Wsuggest-override -Wshadow -Wswitch-default -Wno-error=maybe-uninitialized
-Wno-error=cpp -fdce -fstack-protector-strong -DYADE_VTK -DYADE_OPENMP -fopenmp
-DYADE_GTS -DQGLVIEWER_FOUND -DYADE_OPENGL -DYADE_QT5 -DYADE_CGAL
-DFLOW_ENGINE -DFLOW_ENGINE -DLINSOLV -DYADE_MPI -DTWOPHASEFLOW -DYADE_GL2PS
-DLBM_ENGINE -DTHERMAL -DPARTIALSAT -fPIC -ftrack-macro-expansion=0
-save-temps -DEIGEN_DONT_VECTORIZE -DEIGEN_DONT_ALIGN
-DEIGEN_DISABLE_UNALIGNED_ARRAY_ASSERT -DCGAL_DISABLE_ROUNDING
_MATH_CHECK -frounding-math -std=gnu++14 -MD -MT
CMakeFiles/post_vtk.dir/postprocessing/vtk/VTKRecorder.cpp.o -MF
CMakeFiles/post_vtk.dir/postprocessing/vtk/VTKRecorder.cpp.o.d -o
CMakeFiles/post_vtk.dir/postprocessing/vtk/VTKRecorder.cpp.o -c
/<<PKGBUILDDIR>>/postprocessing/vtk/VTKRecorder.cpp
In file included from /usr/include/boost/python/exception_translator.hpp:10,
from /usr/include/boost/python.hpp:28,
from /<<PKGBUILDDIR>>/lib/high-precision/RealHPConfig.hpp:35,
from /<<PKGBUILDDIR>>/lib/high-precision/Real.hpp:242,
from /<<PKGBUILDDIR>>/lib/base/Math.hpp:12,
from
/<<PKGBUILDDIR>>/lib/compatibility/VTKCompatibility.hpp:29,
from /<<PKGBUILDDIR>>/postprocessing/vtk/VTKRecorder.hpp:2,
from /<<PKGBUILDDIR>>/postprocessing/vtk/VTKRecorder.cpp:3:
/usr/include/boost/config/pragma_message.hpp:24:273: note: ‘#pragma message:
The practice of declaring the Bind placeholders (_1, _2, ...) in the global
namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace
boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the
current behavior.’
24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
|
^
In file included from /usr/include/boost/python/object/iterator.hpp:28,
from /usr/include/boost/python/iterator.hpp:12,
from /usr/include/boost/python.hpp:37:
/usr/include/boost/config/pragma_message.hpp:24:75: note: ‘#pragma message:
This header is deprecated. Use <iterator> instead.’
24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
|
^
In file included from /<<PKGBUILDDIR>>/postprocessing/vtk/VTKRecorder.cpp:27:
/<<PKGBUILDDIR>>/core/Subdomain.hpp: In member function ‘yade::Vector3r
yade::Subdomain::centerOfMass() const’:
/<<PKGBUILDDIR>>/core/Subdomain.hpp:322:49: error: possibly dangling reference
to a temporary [-Werror=dangling-reference]
322 | const shared_ptr<Body>& b = Body::byId(ids[k],
scene);
| ^
/<<PKGBUILDDIR>>/core/Subdomain.hpp:322:63: note: the temporary was destroyed
at the end of the full expression
‘yade::Body::byId(((__gnu_cxx::__alloc_traits<std::allocator<int>,
int>::value_type)((const
yade::Subdomain*)this)->yade::Subdomain::ids.std::vector<int,
std::allocator<int> >::operator[](((std::vector<int, std::allocator<int>
>::size_type)k))), boost::shared_ptr<yade::Scene>((* & scene)))’
322 | const shared_ptr<Body>& b = Body::byId(ids[k],
scene);
|
~~~~~~~~~~^~~~~~~~~~~~~~~
cc1plus: all warnings being treated as errors
make[4]: *** [CMakeFiles/post_vtk.dir/build.make:79:
CMakeFiles/post_vtk.dir/postprocessing/vtk/VTKRecorder.cpp.o] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/debian/build-double'
make[3]: *** [CMakeFiles/Makefile2:557: CMakeFiles/post_vtk.dir/all] Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build-double'
make[2]: *** [Makefile:139: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/debian/build-double'
dh_auto_build: error: cd debian/build-double && make -j1 "INSTALL=install
--strip-program=true" VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:72: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:24: build] Error 2
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: yade
Source-Version: 2023.02a-3
Done: Anton Gladky <gl...@debian.org>
We believe that the bug you reported is fixed in the latest version of
yade, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1037...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Anton Gladky <gl...@debian.org> (supplier of updated yade package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 12 Sep 2023 17:43:51 +0200
Source: yade
Architecture: source
Version: 2023.02a-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Anton Gladky <gl...@debian.org>
Closes: 1037905
Changes:
yade (2023.02a-3) unstable; urgency=medium
.
* [14e4d83] Fix compilation error with GCC-13. (Closes: #1037905)
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