Your message dated Thu, 24 Aug 2023 10:20:43 +0000 with message-id <e1qz7sf-004dh9...@fasolo.debian.org> and subject line Bug#1042116: fixed in libstatgen 1.0.15-7 has caused the Debian Bug report #1042116, regarding libstatgen: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1042116: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1042116 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: libstatgen Version: 1.0.15-6 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20230726 ftbfs-trixie Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > mkdir -p debian/libstatgen-dev/usr/include/libStatGen/ > cp -L include/* debian/libstatgen-dev/usr/include/libStatGen/ > ln -s libStatGen.so.1 libStatGen.so > d-shlibmove --commit \ > --multiarch \ > --devunversioned \ > --exclude-a \ > libStatGen.so > Library package automatic movement utility > set -e > install -d -m 755 debian/libstatgen-dev/usr/lib/x86_64-linux-gnu > install -d -m 755 debian/libstatgen1/usr/lib/x86_64-linux-gnu > mv ./libStatGen.la debian/libstatgen-dev/usr/lib/x86_64-linux-gnu || true > mv ./libStatGen.so debian/libstatgen-dev/usr/lib/x86_64-linux-gnu > mv /<<PKGBUILDDIR>>/libStatGen.so.1 > debian/libstatgen1/usr/lib/x86_64-linux-gnu > PKGDEV=libstatgen-dev > PKGSHL=libstatgen1 > mv: cannot stat './libStatGen.la': No such file or directory > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_installdocs -O--no-parallel > dh_installchangelogs -O--no-parallel > dh_installsystemduser -O--no-parallel > dh_perl -O--no-parallel > dh_link -O--no-parallel > dh_strip_nondeterminism -O--no-parallel > dh_compress -O--no-parallel > dh_fixperms -O--no-parallel > dh_missing -O--no-parallel > dh_dwz -a -O--no-parallel > dh_strip -a -O--no-parallel > dh_makeshlibs -a -O--no-parallel > dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see > diff output below > dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols > file: see diff output below > dpkg-gensymbols: warning: debian/libstatgen1/DEBIAN/symbols doesn't match > completely debian/libstatgen1.symbols > --- debian/libstatgen1.symbols (libstatgen1_1.0.15-6_amd64) > +++ dpkg-gensymbolsnCVnIJ 2023-07-26 19:18:57.912175612 +0000 > @@ -1638,35 +1638,47 @@ > > _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE4findERKS5_@Base > 1.0.14 > > _ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_SaIS5_ENSt8__detail9_IdentityESt8equal_toIS5_ESt4hashIS5_ENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb1ELb1ELb1EEEE4findERKS5_@Base > 1.0.15 > > _ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_SaIS5_ENSt8__detail9_IdentityESt8equal_toIS5_ESt4hashIS5_ENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb1ELb1ELb1EEEE9_M_rehashEmRKm@Base > 1.0.15 > + > _ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_SaIS5_ENSt8__detail9_IdentityESt8equal_toIS5_ESt4hashIS5_ENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb1ELb1ELb1EEEED1Ev@Base > 1.0.15-6 > + > _ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_SaIS5_ENSt8__detail9_IdentityESt8equal_toIS5_ESt4hashIS5_ENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb1ELb1ELb1EEEED2Ev@Base > 1.0.15-6 > _ZNSt12_Destroy_auxILb0EE9__destroyIP6StringEEvT_S4_@Base 1.0.14 > _ZNSt12_Destroy_auxILb0EE9__destroyIPN9IndexBase9ReferenceEEEvT_S5_@Base > 1.0.14 > - _ZNSt12_Vector_baseIN5Cigar13CigarOperatorESaIS1_EED1Ev@Base 1.0.14 > - _ZNSt12_Vector_baseIN5Cigar13CigarOperatorESaIS1_EED2Ev@Base 1.0.14 > - _ZNSt12_Vector_baseIP15SamHeaderRecordSaIS1_EED1Ev@Base 1.0.14 > - _ZNSt12_Vector_baseIP15SamHeaderRecordSaIS1_EED2Ev@Base 1.0.14 > - _ZNSt12_Vector_baseIcSaIcEED1Ev@Base 1.0.14 > - _ZNSt12_Vector_baseIcSaIcEED2Ev@Base 1.0.14 > - _ZNSt12_Vector_baseIfSaIfEED1Ev@Base 1.0.14 > - _ZNSt12_Vector_baseIfSaIfEED2Ev@Base 1.0.14 > - _ZNSt12_Vector_baseIiSaIiEED1Ev@Base 1.0.14 > - _ZNSt12_Vector_baseIiSaIiEED2Ev@Base 1.0.14 > +#MISSING: 1.0.15-6# > _ZNSt12_Vector_baseIN5Cigar13CigarOperatorESaIS1_EED1Ev@Base 1.0.14 > +#MISSING: 1.0.15-6# > _ZNSt12_Vector_baseIN5Cigar13CigarOperatorESaIS1_EED2Ev@Base 1.0.14 > +#MISSING: 1.0.15-6# _ZNSt12_Vector_baseIP15SamHeaderRecordSaIS1_EED1Ev@Base > 1.0.14 > +#MISSING: 1.0.15-6# _ZNSt12_Vector_baseIP15SamHeaderRecordSaIS1_EED2Ev@Base > 1.0.14 > +#MISSING: 1.0.15-6# _ZNSt12_Vector_baseIcSaIcEED1Ev@Base 1.0.14 > +#MISSING: 1.0.15-6# _ZNSt12_Vector_baseIcSaIcEED2Ev@Base 1.0.14 > +#MISSING: 1.0.15-6# _ZNSt12_Vector_baseIfSaIfEED1Ev@Base 1.0.14 > +#MISSING: 1.0.15-6# _ZNSt12_Vector_baseIfSaIfEED2Ev@Base 1.0.14 > +#MISSING: 1.0.15-6# _ZNSt12_Vector_baseIiSaIiEED1Ev@Base 1.0.14 > +#MISSING: 1.0.15-6# _ZNSt12_Vector_baseIiSaIiEED2Ev@Base 1.0.14 > + _ZNSt6vectorIN5Cigar13CigarOperatorESaIS1_EED1Ev@Base 1.0.15-6 > + _ZNSt6vectorIN5Cigar13CigarOperatorESaIS1_EED2Ev@Base 1.0.15-6 > > _ZNSt6vectorIP12SamHeaderTagSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base > 1.0.14 > + _ZNSt6vectorIP15SamHeaderRecordSaIS1_EED1Ev@Base 1.0.15-6 > + _ZNSt6vectorIP15SamHeaderRecordSaIS1_EED2Ev@Base 1.0.15-6 > > _ZNSt6vectorIcSaIcEE17_M_realloc_insertIJcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base > 1.0.14 > + _ZNSt6vectorIcSaIcEED1Ev@Base 1.0.15-6 > + _ZNSt6vectorIcSaIcEED2Ev@Base 1.0.15-6 > > _ZNSt6vectorIfSaIfEE17_M_realloc_insertIJRKfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_@Base > 1.0.14 > > _ZNSt6vectorIfSaIfEE17_M_realloc_insertIJfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_@Base > 1.0.14 > + _ZNSt6vectorIfSaIfEED1Ev@Base 1.0.15-6 > + _ZNSt6vectorIfSaIfEED2Ev@Base 1.0.15-6 > > _ZNSt6vectorIhSaIhEE17_M_realloc_insertIJRKhEEEvN9__gnu_cxx17__normal_iteratorIPhS1_EEDpOT_@Base > 1.0.14 > > _ZNSt6vectorIhSaIhEE17_M_realloc_insertIJhEEEvN9__gnu_cxx17__normal_iteratorIPhS1_EEDpOT_@Base > 1.0.14 > > _ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base > 1.0.14 > + _ZNSt6vectorIiSaIiEED1Ev@Base 1.0.15-6 > + _ZNSt6vectorIiSaIiEED2Ev@Base 1.0.15-6 > _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_@Base > 1.0.15 > _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_@Base > 1.0.15 > _ZNSt7__cxx119to_stringEx@Base 1.0.15 > > _ZNSt8_Rb_treeImSt4pairIKm5ChunkESt10_Select1stIS3_ESt4lessImESaIS3_EE22_M_emplace_hint_uniqueIJS0_ImS2_EEEESt17_Rb_tree_iteratorIS3_ESt23_Rb_tree_const_iteratorIS3_EDpOT_@Base > 1.0.15 > - > _ZNSt8_Rb_treeImSt4pairIKm5ChunkESt10_Select1stIS3_ESt4lessImESaIS3_EE24_M_get_insert_unique_posERS1_@Base > 1.0.15 > - > _ZNSt8_Rb_treeImSt4pairIKm5ChunkESt10_Select1stIS3_ESt4lessImESaIS3_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS3_ERS1_@Base > 1.0.15 > +#MISSING: 1.0.15-6# > _ZNSt8_Rb_treeImSt4pairIKm5ChunkESt10_Select1stIS3_ESt4lessImESaIS3_EE24_M_get_insert_unique_posERS1_@Base > 1.0.15 > +#MISSING: 1.0.15-6# > _ZNSt8_Rb_treeImSt4pairIKm5ChunkESt10_Select1stIS3_ESt4lessImESaIS3_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS3_ERS1_@Base > 1.0.15 > _ZSt16__do_uninit_copyIPK6StringPS0_ET0_T_S5_S4_@Base 1.0.15 > _ZSt18__do_uninit_fill_nIPSt6vectorIbSaIbEEmS2_ET_S4_T0_RKT1_@Base 1.0.15 > > _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_S9_@Base > 1.0.15 > - _ZZNSt8__detail18__to_chars_10_implIyEEvPcjT_E8__digits@Base 1.0.15 > +#MISSING: 1.0.15-6# > _ZZNSt8__detail18__to_chars_10_implIyEEvPcjT_E8__digits@Base 1.0.15 > bQualityConvertor@Base 1.0.14 > (c++)"baseQualityConvertor::baseQualityConvertor()@Base" 1.0.14 > (c++)"baseQualityConvertor::toDouble(unsigned char)@Base" 1.0.14 > dh_makeshlibs: error: failing due to earlier errors > make: *** [debian/rules:12: binary] Error 25 The full build log is available from: http://qa-logs.debian.net/2023/07/26/libstatgen_1.0.15-6_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230726;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230726&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Source: libstatgen Source-Version: 1.0.15-7 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of libstatgen, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1042...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated libstatgen package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 24 Aug 2023 11:34:46 +0200 Source: libstatgen Architecture: source Version: 1.0.15-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 1042116 Changes: libstatgen (1.0.15-7) unstable; urgency=medium . * Team upload. * d/*.symbols*: update to fix build failure with gcc 13. Several symbols having disappeared or having been introduced by the move to gcc 13 are most likely compiler leaked and shouldn't interfere with consumers of the library. They are marked as (optional). Closes: #1042116 * d/clean: remove leftover doxygen files. * d/control: declare compliance to standards version 4.6.2. Checksums-Sha1: 8c3969f16c261fc940181a4773f55363559bafa9 2297 libstatgen_1.0.15-7.dsc ab511145885c7843e4708b1da6160654b32e9c84 21064 libstatgen_1.0.15-7.debian.tar.xz Checksums-Sha256: fa57acacf4339222e2802922ef9b27ca2138ff580d0d80287aa4fb0cbb9211b8 2297 libstatgen_1.0.15-7.dsc f960ee08a99e6a14656f9c91fc9945a8ba1c405d330c91217b98ae35a459e531 21064 libstatgen_1.0.15-7.debian.tar.xz Files: fa3f185e4e3cd4feffb641cc4a9fded1 2297 science optional libstatgen_1.0.15-7.dsc 01846a78223e5493d7c71c37ad94ddd0 21064 science optional libstatgen_1.0.15-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmTnJqYUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdofChAAqUO+v6KtCQV6c/Gz1VNiwO+pif8o ZNWDsBpY7lzFdOTpwDiQFGZXy9GS8ccmG3f6a3auYuTO3bq5JdTde3FsB8VsX5IM 2USl+2HWzmjJWuyc8F8WB814fB67Le7iaat58HNExDM8pWmQMlyBL9CuF174xmY0 Wsbsw/GsgSqJFkZ59JZsRbOvAPM8G+7upSupoCcbR/OvwLAep8/lBhJL0EHg0cEB n5+qai6wlbYoWsQLPLFdl7V8a4t+Itw2sACFacKxNHbOfLJ0wV9vhlkisB2+Cyzz B83UjjiKF0QlzS95ckV0PNISj22Goi1SmfjPPmdwcgi99q+zgbD30pn/KtN56YOs ZKUfPQ6rRPLi9SErCL4HQm6sqqxsmHNXdF1uN46KQ7aENwjQagt8UHLOrwmw5Vtv vzpt6m0cubT718TbVYTqGqIHy7Bv/LjuS256bw1Pja4cdSM5E+kabgEXeuAlnT/3 tg91ppHlwpGoA5F0y5qlcRUlqTmiUeCKqT9kk7yI0OG0VqZNS+GEBk/Qh91Fbf6H t2AxlwSmhavSlfqYx21wXzf4PhOTK7hMYHaUtrfX8gMfeuEGNVPAhlnpkM9NxTOJ s58oajzDqwVnSW9WFT2TrkwSWaNCxm4rwkVi2Xi84WuIQwVvnr677IATBrh5ujkm lPKUYBOwKvgRmZs= =aR/h -----END PGP SIGNATURE-----
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