Your message dated Mon, 14 Aug 2023 20:37:09 +0000 with message-id <e1qvejj-005o5l...@fasolo.debian.org> and subject line Bug#1037816: fixed in parsinsert 1.04-13 has caused the Debian Bug report #1037816, regarding parsinsert: ftbfs with GCC-13 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1037816: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1037816 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:parsinsert Version: 1.04-12 Severity: normal Tags: sid trixie User: debian-...@lists.debian.org Usertags: ftbfs-gcc-13 [This bug is targeted to the upcoming trixie release] Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-13/g++-13, but succeeds to build with gcc-12/g++-12. The severity of this report will be raised before the trixie release. The full build log can be found at: http://qa-logs.debian.net/2023/05/22/logs/parsinsert_1.04-12_unstable_gccexp.log The last lines of the build log are at the end of this report. To build with GCC 13, either set CC=gcc-13 CXX=g++-13 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-13/porting_to.html [...] ====================================================================== Insertion: [ 93086] [ 1173 sites] 0 [100%] [136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] 0 ( 0 diffs, 0 partials, 0 indels) [Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] Assigned Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] Correct Taxonomy:[Archaea;Euryarchaeota;Thermoplasmata;Thermoplasmatales;Thermoplasmataceae;Thermoplasma] ====================================================================== Insertion: [ 93354] [ 1218 sites] 0 [100%] [136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] 0 ( 0 diffs, 0 partials, 0 indels) [Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] Assigned Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] Correct Taxonomy:[Bacteria;Bacteroidetes;Sphingobacteria;Sphingobacteriales] ====================================================================== Insertion: [ 9475] [ 1283 sites] 0 [100%] [136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] 0 ( 0 diffs, 0 partials, 0 indels) [Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] Assigned Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] Correct Taxonomy:[Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Actinobacillus] ====================================================================== Insertion: [ 95741] [ 1280 sites] 0 [100%] [136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] 0 ( 0 diffs, 0 partials, 0 indels) [Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] Assigned Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] Correct Taxonomy:[Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Rhodobiaceae;Parvibaculum] ====================================================================== Insertion: [ 99538] [ 1184 sites] 0 [100%] [136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] 0 ( 0 diffs, 0 partials, 0 indels) [Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] Assigned Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] Correct Taxonomy:[Bacteria;Bacteroidetes;Flavobacteria;Flavobacteriales;Flavobacteriaceae;Chryseobacterium] ====================================================================== Insertion: [ 99764] [ 1261 sites] 0 [100%] [136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] 0 ( 0 diffs, 0 partials, 0 indels) [Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] Assigned Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] Correct Taxonomy:[Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Brucellaceae;Brucella] Taxonomies List: [root] 957 [Bacteria] 957 [Actinobacteria] 957 [Actinobacteria] 957 [Acidimicrobidae] 957 [Acidimicrobiales] 957 [Acidimicrobineae] 957 [Acidimicrobiaceae] 957 [Acidimicrobium] 957 Writing Newick tree file: [set1000.tree] Rank Matches: _________Precision________ __________Recall__________ Domain: 957 938 ( 98.01%) 938 957 ( 98.01%) Phylum: 957 83 ( 8.67%) 83 957 ( 8.67%) Class: 957 83 ( 8.67%) 83 957 ( 8.67%) Order: 915 0 ( 0.00%) 0 915 ( 0.00%) Family: 876 0 ( 0.00%) 0 876 ( 0.00%) Genus: 706 0 ( 0.00%) 0 706 ( 0.00%) Species: 53 0 ( 0.00%) 0 53 ( 0.00%) Insert Time = 13, 265015 per hour Process Completed: 16 sec incorrect result make[1]: *** [debian/rules:27: override_dh_auto_test] Error 1 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:15: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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--- Begin Message ---Source: parsinsert Source-Version: 1.04-13 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of parsinsert, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1037...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated parsinsert package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 14 Aug 2023 21:46:10 +0200 Source: parsinsert Architecture: source Version: 1.04-13 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 1037816 Changes: parsinsert (1.04-13) unstable; urgency=medium . * Team upload. * d/rules: drop compiler optimization to -O1. This used to be done only on a handful of cpu architectures in the past, but since gcc-13, precision errors also affect amd64. (Closes: #1037816) * d/s/lintian-overrides: adjust mismatched override. * d/control: declare compliance to standards version 4.6.2. Checksums-Sha1: ca65e95c9689ea7f272249e25570ea06787889aa 2219 parsinsert_1.04-13.dsc 6699108f58b15b5add7e621d1850cdf3daf200a9 2841340 parsinsert_1.04-13.debian.tar.xz Checksums-Sha256: 6546b3709a935ee5f11964368903396854df04f1f207cd3bcae950d16879211f 2219 parsinsert_1.04-13.dsc a49711913de18165596730f46acfe9cbd4fdeca4930fd7222f460a4728ada620 2841340 parsinsert_1.04-13.debian.tar.xz Files: 81bcfd7ccb72c9b888d737e306681a0e 2219 science optional parsinsert_1.04-13.dsc a312d9f533817aab242dcc8fc5ba53b9 2841340 science optional parsinsert_1.04-13.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmTahogUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoAaRAAvYvbGSEDJidtz1hXeG7O2ZX4xRM2 XqL8742WdxHGq1UlE02FH1pOrG3nZA+TFjhwNAyGxEatqfeFxRR5seQG2OV/8Sl4 iSwYAKSC3HsNsdnEBjVBtRWKeov+/7lBr93Ir9pNukz/Ud/O0ZP326DxD1ND2haZ 3JXkcwfIf8ihbmYNy0HfvLMwJNPn08ciztsSNBFYlCwuwUG+gaY99ZIMTeALd7RU 0Utm86DYku/QUuDUw2G4ztCgbWOsGVGNv7yFwtN5nmiWI/ffgYuDe3cHlbnHAl4L /8SvfrRmi7hmkrrwzWadTLrWIcf2TJSpvdXJ2GYfuZfVB9/zU36AQmm+knbo5jm5 SOyCddeoK4FRjsdLMKK9ZDCRS9T66kC2hGIitx/e4s7w5O3LktWMN+Bb3W6L4YnV aFiCaN4hnYU/vWi8OxJistUte3LFHkVlXvcGd1RA746J2ZlBK2lMMJYewZsYLq7A 1QkelDppDyqxhQYYtK8UYdbRPuhjEQcR7XgW6UOMv0DMI9qp79hqY8PQy86ZvxEC g5SyvbNwvZB41HQQS9N1Nl6CG6m7dbOOy9bGOQ+lWsIfPX1HANHExI8Wm60JgP84 p7ytYMghd5V3+TCWBEnIJRjR/CAmAkUejWXhZOqqajPRdaD0ouJIMdX0UkyU5rCq hrtX9fMkW3jR87k= =ry9F -----END PGP SIGNATURE-----
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