Your message dated Sun, 13 Aug 2023 12:43:29 +0000
with message-id <e1qvarn-000cce...@fasolo.debian.org>
and subject line Bug#1042204: fixed in libbpp-seq 2.4.1-10
has caused the Debian Bug report #1042204,
regarding libbpp-seq: ftbfs with GCC-13
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1042204: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1042204
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:libbpp-seq
Version: 2.4.1-9
Severity: normal
Tags: sid trixie
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-13

[This bug is targeted to the upcoming trixie release]

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-13/g++-13, but succeeds to build with gcc-12/g++-12. The
severity of this report will be raised before the trixie release.

The full build log can be found at:
http://qa-logs.debian.net/2023/05/22/logs/libbpp-seq_2.4.1-9_unstable_gccexp.log
The last lines of the build log are at the end of this report.

To build with GCC 13, either set CC=gcc-13 CXX=g++-13 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-13/porting_to.html

[...]
- 
_ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
- 
_ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.1
- 
_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
- 
_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
- 
_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
- 
_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.1
- 
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
- 
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
- 
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
- 
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.1
- 
_ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESG_IJEEEEESt17_Rb_tree_iteratorIS5_ESt23_Rb_tree_const_iteratorIS5_EDpOT_@Base
 2.4.1
- 
_ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
- 
_ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base
 2.4.1
- 
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOmEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
- 
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
- 
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOcEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKiSt3mapIidSt4lessIiESaIS0_IS1_dEEEESt10_Select1stIS8_ES4_SaIS8_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKiSt3mapIidSt4lessIiESaIS0_IS1_dEEEESt10_Select1stIS8_ES4_SaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESG_IJEEEEESt17_Rb_tree_iteratorIS5_ESt23_Rb_tree_const_iteratorIS5_EDpOT_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOmEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.1
  
_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEEPS7_ET0_T_SG_SF_@Base
 2.4.1
  
_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPKSt6vectorIcSaIcEES2_IS4_SaIS4_EEEEPS4_ET0_T_SC_SB_@Base
 2.4.1
  
_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPKSt6vectorIdSaIdEES2_IS4_SaIS4_EEEEPS4_ET0_T_SC_SB_@Base
 2.4.1
  _ZSt16__do_uninit_copyIPKN3bpp13BasicSequenceEPS1_ET0_T_S6_S5_@Base 2.4.1
  
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPPN3bpp5RangeImEESt6vectorIS5_SaIS5_EEEElNS0_5__ops15_Iter_comp_iterINS2_10rangeComp_ImEEEEEvT_SG_T0_T1_@Base
 2.4.1
- _ZSt19piecewise_construct@Base 2.4.1
+#MISSING: 2.4.1-9# _ZSt19piecewise_construct@Base 2.4.1
+ 
_ZSteqIcSt11char_traitsIcESaIcEEbRKNSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_@Base
 2.4.1-9
  
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_S9_@Base
 2.4.1
  
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_OS8_@Base
 2.4.1
- 
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_@Base
 2.4.1
- 
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EERKS8_SA_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_@Base
 2.4.1
+#MISSING: 2.4.1-9# 
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EERKS8_SA_@Base
 2.4.1
  _ZTIN3bpp10BowkerTestE@Base 2.4.1
  _ZTIN3bpp10IAlignmentE@Base 2.4.1
  _ZTIN3bpp10IOSequenceE@Base 2.4.1
@@ -3338,6 +3367,6 @@
  
_ZTv0_n96_NK3bpp34EchinodermMitochondrialGeneticCode21getNumberOfStopCodonsEv@Base
 2.4.1
  
_ZTv0_n96_NK3bpp34VertebrateMitochondrialGeneticCode21getNumberOfStopCodonsEv@Base
 2.4.1
  
_ZTv0_n96_NK3bpp36InvertebrateMitochondrialGeneticCode21getNumberOfStopCodonsEv@Base
 2.4.1
- _ZZNSt8__detail18__to_chars_10_implImEEvPcjT_E8__digits@Base 2.4.1
+#MISSING: 2.4.1-9# 
_ZZNSt8__detail18__to_chars_10_implImEEvPcjT_E8__digits@Base 2.4.1
  _ZeqRKN3bpp4SiteES2_@Base 2.4.1
  _ZltRKN3bpp4SiteES2_@Base 2.4.1
dh_makeshlibs: error: failing due to earlier errors
make: *** [debian/rules:10: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2

--- End Message ---
--- Begin Message ---
Source: libbpp-seq
Source-Version: 2.4.1-10
Done: Michael R. Crusoe <cru...@debian.org>

We believe that the bug you reported is fixed in the latest version of
libbpp-seq, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1042...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated libbpp-seq package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sun, 13 Aug 2023 13:21:18 +0200
Source: libbpp-seq
Architecture: source
Version: 2.4.1-10
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 1037721 1042204
Changes:
 libbpp-seq (2.4.1-10) unstable; urgency=medium
 .
   * Team upload.
   * Standards-Version: 4.6.2 (routine-update)
   * Update symbols for gcc-13. Closes: #1037721, #1042204
   * d/patches/spelling: fix a typo
   * d/control: Use ${devlibs:Depends} for the -dev package.
Checksums-Sha1:
 218771f4960c9cb9fb82ad57d12174ebedc81563 2104 libbpp-seq_2.4.1-10.dsc
 e7f4afad355dc327ef3a55ef9cc77dcb077b8de1 28208 
libbpp-seq_2.4.1-10.debian.tar.xz
 6eb165bca0ced4bdc6bd83e3c935b81d0d64f9c9 8397 
libbpp-seq_2.4.1-10_source.buildinfo
Checksums-Sha256:
 fafcaba4457201e9f4885e596241a913068cc9062504407599b94bc984597c7e 2104 
libbpp-seq_2.4.1-10.dsc
 a38c526879ef263d2c256193735dfaedefecebdfa3ecde418274c1fd491a19ab 28208 
libbpp-seq_2.4.1-10.debian.tar.xz
 44ac48236bc3a09662bb2a955f84ce5d1d1fa23d22f7c8df3ba396b5bcc94992 8397 
libbpp-seq_2.4.1-10_source.buildinfo
Files:
 6496c362c2e6bc9e18f49f5bd778d4b3 2104 science optional libbpp-seq_2.4.1-10.dsc
 3e53b8d2d122c4c7c8dc3a125ff5b923 28208 science optional 
libbpp-seq_2.4.1-10.debian.tar.xz
 39f7d6281b808b52f4b28865cea49680 8397 science optional 
libbpp-seq_2.4.1-10_source.buildinfo

-----BEGIN PGP SIGNATURE-----

iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmTYxTwACgkQPCZ2P2xn
5uIEbBAAvzeQ3ZhmpgJJArz9/HCW0YB++ydvKYczrnQp6FfiFbFf/+RmdisTchgh
QMMMv+GhyIgxM9Rl64CCSl9fouq6PWDUdCQJGkRZ2ArQScg5KFlsq8WyCv4qf9sh
InpUhjkrPOwG0Akfz3Pr4Rdg65OkZ7Xgm72pSHI6w+avOubBD4lfeKHwAoJSXhyO
jNbzG/MCFrmsRr/SNk/QOTtZ6wYyZjKfbsqOI6oVzdY4WzG9T6tqXu0m1pJSUJSJ
FW1NcZseiHGaIWR9g+xoDrue8e89v5uaU2nvKuoNYdu7pOEK0K/o7VA4O1U5Cz6H
/Z3wBiGGkTqixCTR7Mc3ADQCS2AVe9oeTgOIK8wVONiy1OOOtJExfvzBRj/jcReK
1PgEYVOWGaZxerSsFcoiFkJbBIDPiBZsdC6kXFWetPHG6r8hCjUHKgZN5PJdPfyy
Wm3a5q5hoDfpkLcawW5jo0thEBzi0KwUkZZAgMXMdBIXQNc95JW2N2WRHIs8k8tj
G7S6Jp1cu/3cCTHIB65xu2wcLSCQdzcGSmW9/iCBsoc8ZVolIRE8Ms63fvtg6Vl4
enp/MRnyNXk1mNhYZ2f5+76Fup7TNYmbLeWWhkIWCsHAYNXBOh2h2Gnf4kcalX6h
TV0g7kpnyjaKCybV18NPBHTgyT8qM1aSkp9UUqSVQrYkW0mgYwU=
=dFHm
-----END PGP SIGNATURE-----

--- End Message ---

Reply via email to