Your message dated Wed, 09 Aug 2023 10:49:15 +0000
with message-id <e1qtgkd-009chb...@fasolo.debian.org>
and subject line Bug#1042180: fixed in macs 2.2.9.1-1
has caused the Debian Bug report #1042180,
regarding macs: FTBFS: dpkg-buildpackage: error: dpkg-source -b . subprocess
returned exit status 2
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1042180: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1042180
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: macs
Version: 2.2.7.1-6
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20230726 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_clean || true
> I: pybuild base:240: python3.11 setup.py clean
> /usr/lib/python3/dist-packages/setuptools/__init__.py:84:
> _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are
> deprecated.
> !!
>
>
> ********************************************************************************
> Requirements should be satisfied by a PEP 517 installer.
> If you are using pip, you can try `pip install --use-pep517`.
>
> ********************************************************************************
>
> !!
> dist.fetch_build_eggs(dist.setup_requires)
> Traceback (most recent call last):
> File
> "/usr/lib/python3/dist-packages/pkg_resources/_vendor/packaging/requirements.py",
> line 35, in __init__
> parsed = _parse_requirement(requirement_string)
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File
> "/usr/lib/python3/dist-packages/pkg_resources/_vendor/packaging/_parser.py",
> line 64, in parse_requirement
> return _parse_requirement(Tokenizer(source, rules=DEFAULT_RULES))
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File
> "/usr/lib/python3/dist-packages/pkg_resources/_vendor/packaging/_parser.py",
> line 82, in _parse_requirement
> url, specifier, marker = _parse_requirement_details(tokenizer)
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File
> "/usr/lib/python3/dist-packages/pkg_resources/_vendor/packaging/_parser.py",
> line 126, in _parse_requirement_details
> marker = _parse_requirement_marker(
> ^^^^^^^^^^^^^^^^^^^^^^^^^^
> File
> "/usr/lib/python3/dist-packages/pkg_resources/_vendor/packaging/_parser.py",
> line 147, in _parse_requirement_marker
> tokenizer.raise_syntax_error(
> File
> "/usr/lib/python3/dist-packages/pkg_resources/_vendor/packaging/_tokenizer.py",
> line 165, in raise_syntax_error
> raise ParserSyntaxError(
> pkg_resources.extern.packaging._tokenizer.ParserSyntaxError: Expected end or
> semicolon (after name and no valid version specifier)
> numpy>=>=1.17
> ^
>
> The above exception was the direct cause of the following exception:
>
> Traceback (most recent call last):
> File "/<<PKGBUILDDIR>>/setup.py", line 84, in <module>
> main()
> File "/<<PKGBUILDDIR>>/setup.py", line 51, in main
> setup(name="MACS2",
> File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 106, in
> setup
> _install_setup_requires(attrs)
> File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 79, in
> _install_setup_requires
> _fetch_build_eggs(dist)
> File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 84, in
> _fetch_build_eggs
> dist.fetch_build_eggs(dist.setup_requires)
> File "/usr/lib/python3/dist-packages/setuptools/dist.py", line 907, in
> fetch_build_eggs
> return _fetch_build_eggs(self, requires)
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/usr/lib/python3/dist-packages/setuptools/installer.py", line 38, in
> _fetch_build_eggs
> resolved_dists = pkg_resources.working_set.resolve(
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 806,
> in resolve
> requirements = list(requirements)[::-1]
> ^^^^^^^^^^^^^^^^^^
> File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3174,
> in __init__
> super(Requirement, self).__init__(requirement_string)
> File
> "/usr/lib/python3/dist-packages/pkg_resources/_vendor/packaging/requirements.py",
> line 37, in __init__
> raise InvalidRequirement(str(e)) from e
> pkg_resources.extern.packaging.requirements.InvalidRequirement: Expected end
> or semicolon (after name and no valid version specifier)
> numpy>=>=1.17
> ^
> E: pybuild pybuild:388: clean: plugin distutils failed with: exit code=1:
> python3.11 setup.py clean
> dh_auto_clean: error: pybuild --clean -i python{version} -p 3.11 returned
> exit code 13
> rm -Rf test/macs2.2.7.1-6* test/speedtest*
> rm -f debian/*.1 debian/*-man-include
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_autoreconf_clean -O--buildsystem=pybuild
> dh_clean -O--buildsystem=pybuild
> dpkg-source -b .
> dpkg-source: info: using options from macs-2.2.7.1/debian/source/options:
> --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building macs using existing ./macs_2.2.7.1.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: info: local changes detected, the modified files are:
> macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/.pydistutils.cfg
> dpkg-source: error: aborting due to unexpected upstream changes, see
> /tmp/macs_2.2.7.1-6.diff.F2puIH
> dpkg-source: info: Hint: make sure the version in debian/changelog matches
> the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source
> --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
> --------------------------------------------------------------------------------
> Build finished at 2023-07-26T19:11:48Z
The full build log is available from:
http://qa-logs.debian.net/2023/07/26/macs_2.2.7.1-6_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230726;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230726&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: macs
Source-Version: 2.2.9.1-1
Done: Michael R. Crusoe <cru...@debian.org>
We believe that the bug you reported is fixed in the latest version of
macs, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1042...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated macs package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 09 Aug 2023 12:18:49 +0200
Source: macs
Architecture: source
Version: 2.2.9.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 1041203 1042180
Changes:
macs (2.2.9.1-1) unstable; urgency=medium
.
* New upstream release. Closes: #1042180, #1041203
* d/patches: drop enable_python3.10.patch & no-pip.patch; they are no
longer needed
* d/patches: forward patches upstream as appropriate.
* no longer call dh_auto_clean to avoid call to "setup.py clean" which
always runs cython.
* Standards-Version: 4.6.2 (routine-update)
* Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
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e368c9483747a0fa8acf1d4cf3900b8d86558a9d 1267564 macs_2.2.9.1-1.debian.tar.xz
763cbb21350d424c3053859687496d419e0bab41 9165 macs_2.2.9.1-1_source.buildinfo
Checksums-Sha256:
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macs_2.2.9.1-1.dsc
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macs_2.2.9.1-1.debian.tar.xz
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macs_2.2.9.1-1_source.buildinfo
Files:
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1e625b6c2411fded0ef4d1a5bfe0f71f 133109075 science optional
macs_2.2.9.1.orig.tar.gz
f2e320ecd5b43b98a6e488419342d793 1267564 science optional
macs_2.2.9.1-1.debian.tar.xz
4a23095c83a5d982c64b416eb52d8822 9165 science optional
macs_2.2.9.1-1_source.buildinfo
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