Your message dated Thu, 27 Jul 2023 05:51:36 +0000 with message-id <e1qotus-008h91...@fasolo.debian.org> and subject line Bug#1042186: fixed in gemmi 0.6.2+ds-4 has caused the Debian Bug report #1042186, regarding gemmi: FTBFS: dh_install: error: missing files, aborting to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1042186: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1042186 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: gemmi Version: 0.6.2+ds-3 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20230726 ftbfs-trixie Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > make[2]: Nothing to be done for 'preinstall'. > make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > Install the project... > /usr/bin/cmake -P cmake_install.cmake > -- Install configuration: "None" > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/binner.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/atof.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/sfcalc.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/dirwalk.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/eig3.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/cif2mtz.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/reciproc.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/scaling.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/read_map.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/formfact.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/input.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/fprime.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/twin.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/iterator.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/util.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/gz.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/bond_idx.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/chemcomp_xyz.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/elem.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/assembly.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/c4322.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/bessel.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/refln.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/smcif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/calculate.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/to_pdb.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/crd.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/cellred.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/chemcomp.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/enumstr.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/floodfill.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/riding_h.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/sprintf.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mmcif_impl.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mmread_gz.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/read_cif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/align.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/span.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/pdb.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/remarks.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/xds_ascii.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/seqid.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/qcp.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/version.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/addends.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/linkhunt.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/cifdoc.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/resinfo.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/neutron92.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/asudata.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/cif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/interop.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/monlib.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/atox.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/contact.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/pdb_id.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/fourier.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/to_cif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/math.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/levmar.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/unitcell.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/small.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/dencalc.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/fileutil.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/solmask.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mmcif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/metadata.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mtz.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mtz2cif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/to_chemcomp.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/neighbor.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/modify.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/symmetry.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/stats.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/fstream.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/recgrid.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mmread.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/merge.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/ccp4.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/model.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/to_mmcif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/json.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/seqalign.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/topo.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mmdb.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/numb.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/to_json.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/polyheur.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/asumask.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/third_party > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/third_party/pocketfft_hdronly.h > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/third_party/fast_float.h > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/third_party/tinydir.h > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/third_party/sajson.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/blob.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/select.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/it92.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/utf.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/fail.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/grid.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/pirfasta.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/gemmi > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libgemmi_cpp.a > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-targets.cmake > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-targets-none.cmake > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-config.cmake > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-config-version.cmake > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi.cpython-311-x86_64-linux-gnu.so > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/maskcheck.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/__pycache__ > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/monomers.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/rama_gather.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/hello.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/map2mtz.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/aafreq.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/refln-stats.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/__init__.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/ccd_gi.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/matthews.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/from_json.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/mtz_i_sigi.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/mtrix_iso.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/merge_mtz_mmcif.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/maskdiff.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/patterson_slice.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/col_order.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/__main__.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/multiproc.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/simple_search.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/sub_ccd.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/cif_i_sigi.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/weight.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/long_geom.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/rama_plot.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/ccd_subgraph.py > make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > dh_install -O--buildsystem=cmake > dh_install: warning: Cannot find (any matches for) "usr/lib/python3" (tried > in ., debian/tmp) > > dh_install: warning: python3-gemmi missing files: usr/lib/python3 > dh_install: error: missing files, aborting > make: *** [debian/rules:8: binary] Error 25 The full build log is available from: http://qa-logs.debian.net/2023/07/26/gemmi_0.6.2+ds-3_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230726;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230726&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Source: gemmi Source-Version: 0.6.2+ds-4 Done: Andrius Merkys <mer...@debian.org> We believe that the bug you reported is fixed in the latest version of gemmi, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1042...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andrius Merkys <mer...@debian.org> (supplier of updated gemmi package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 27 Jul 2023 01:18:39 -0400 Source: gemmi Architecture: source Version: 0.6.2+ds-4 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Andrius Merkys <mer...@debian.org> Closes: 1042186 Changes: gemmi (0.6.2+ds-4) unstable; urgency=medium . * Export DEB_PYTHON_INSTALL_LAYOUT = deb in debian/rules to adjust to recent change in CMake's Python_SITEARCH (Closes: #1042186) Checksums-Sha1: 9eed6f94d53a909a41a9e861d748636182a328eb 2280 gemmi_0.6.2+ds-4.dsc 0730dfc05cf5976b9e9657c60ab65507f6a65f41 6796 gemmi_0.6.2+ds-4.debian.tar.xz 7f8cab16f7da16c1ed78566bb361acad2610654c 8948 gemmi_0.6.2+ds-4_source.buildinfo Checksums-Sha256: 22372fcbf751679490c34108443f3a3c6636b34fa01089820305ee850fc587ca 2280 gemmi_0.6.2+ds-4.dsc 8ecac6e3a086b19b6483b8b68257355d90839399b27a1c993c121d84dcb96536 6796 gemmi_0.6.2+ds-4.debian.tar.xz 697407bbf86c5dc876d83903487a452a232fadb638c5d3f879f63f640b0eedf2 8948 gemmi_0.6.2+ds-4_source.buildinfo Files: a4e024580a83e6dd5fca50de9f3fb550 2280 science optional gemmi_0.6.2+ds-4.dsc d38f4ba1e5975627da13a22fa764d1ed 6796 science optional gemmi_0.6.2+ds-4.debian.tar.xz 5fed48a43146e5a219855d071867792b 8948 science optional gemmi_0.6.2+ds-4_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmTB/mASHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHILoP/0pSrwOjbTTtdou5X8udwkAHagWq/9tV iMH9Z4ys2dU1O8G8qD4928/uiToxeH5HHoz4+5Hl4UYdy6AubAt88nxH0uQb5UZi rVTXE0rxY6ZrYh7yWQpJVK3rVC4u01IJPi8rPmFYXxui+uW4/drVsVhTa3K74/hp BVxIXc5ljkXt91paZEmKY1ngyQYbYs8kbtdslirmg+rhyA1mmmB7IkwaT7cIsjBm zKyfGl+VE4jX8nFsyGvAWyLnS9j/o1RB3WbepLzx1ipYSBDZ2iqh1HOYd50xuXUY 4AgyVqMX5JwCSHTb5QYsssUgYlTRxcCR5+EMGJoUZiZvcd9D/XQCTuRLFDBTQdeo MOYHP74AeBLaaRCinHyAlgnMALvwarNyUtcVpQ7sXpsztuAlrgkGH1XokL7DEYnI v9IZI2EIGJgR0POdkGbA8V6Bf80rkDBNxjLQuDDuAiXECYlbyJvaj+n7GaKbr8ru A80OHNhNE0LNhaiq6QtDZ5H7doZq+EqyHN9ajW/nnH3jb9mFtdezTozdwR8BEUAN Q9BumABmKYVCOGVjEsZ9NBg+io8PG0nZPnNVMPVU80Sk6TUC1vXwM/WQj+pLmOiR ngg5aoJ9BhPhWIr4k2422lDVkk4iXqaseG6ppuzXBUOFdfiS/uGRj3nELAkGfOni HioLxe3oi58l =g/p7 -----END PGP SIGNATURE-----
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