Your message dated Fri, 21 Jul 2023 09:27:25 +0000
with message-id <e1qmmq1-00gdty...@fasolo.debian.org>
and subject line Bug#1039634: fixed in r-bioc-biocneighbors 1.18.0+ds-1
has caused the Debian Bug report #1039634,
regarding r-bioc-biocneighbors: autopkgtest failure with r-base (4.3.1-1)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1039634: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1039634
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-bioc-biocneighbors
Version: 1.16.0+ds-1
Severity: serious
Justification: autopkgtest failure
Dear Maintainer,
The autopkgtest of your package fail with r-base (4.3.1-1):
344s [ FAIL 6 | WARN 488 | SKIP 0 | PASS 3372 ]
344s
344s ══ Failed tests
════════════════════════════════════════════════════════════════
344s ── Error ('test-find-exhaustive.R:11'): findExhaustive() behaves
correctly on simple inputs ──
344s Error in `FNN::get.knn(X, k = k)`: DLL requires the use of native symbols
344s Backtrace:
344s ▆
344s 1. └─BiocNeighbors:::refFindKNN(X, k = k) at test-find-exhaustive.R:11:12
344s 2. └─FNN::get.knn(X, k = k) at tests/testthat/setup.R:58:8
344s ── Error ('test-find-kmknn.R:11'): findKmknn() behaves correctly on
simple inputs ──
344s Error in `FNN::get.knn(X, k = k)`: DLL requires the use of native symbols
344s Backtrace:
344s ▆
344s 1. └─BiocNeighbors:::refFindKNN(X, k = k) at test-find-kmknn.R:11:12
344s 2. └─FNN::get.knn(X, k = k) at tests/testthat/setup.R:58:8
344s ── Error ('test-find-vptree.R:11'): findVptree() behaves correctly on
simple inputs ──
344s Error in `FNN::get.knn(X, k = k)`: DLL requires the use of native symbols
344s Backtrace:
344s ▆
344s 1. └─BiocNeighbors:::refFindKNN(X, k = k) at test-find-vptree.R:11:12
344s 2. └─FNN::get.knn(X, k = k) at tests/testthat/setup.R:58:8
344s ── Error ('test-query-exhaustive.R:15'): queryExhaustive() behaves
correctly with queries ──
344s Error in `FNN::get.knnx(data = X, query = Y, k = k)`: DLL requires the
use of native symbols
344s Backtrace:
344s ▆
344s 1. └─BiocNeighbors:::refQueryKNN(X, Y, k = k) at
test-query-exhaustive.R:15:12
344s 2. └─FNN::get.knnx(data = X, query = Y, k = k) at
tests/testthat/setup.R:78:8
344s ── Error ('test-query-kmknn.R:15'): queryKmknn() behaves correctly with
queries ──
344s Error in `FNN::get.knnx(data = X, query = Y, k = k)`: DLL requires the
use of native symbols
344s Backtrace:
344s ▆
344s 1. └─BiocNeighbors:::refQueryKNN(X, Y, k = k) at test-query-kmknn.R:15:12
344s 2. └─FNN::get.knnx(data = X, query = Y, k = k) at
tests/testthat/setup.R:78:8
344s ── Error ('test-query-vptree.R:15'): queryVptree() behaves correctly with
queries ──
344s Error in `FNN::get.knnx(data = X, query = Y, k = k)`: DLL requires the
use of native symbols
344s Backtrace:
344s ▆
344s 1. └─BiocNeighbors:::refQueryKNN(X, Y, k = k) at
test-query-vptree.R:15:12
344s 2. └─FNN::get.knnx(data = X, query = Y, k = k) at
tests/testthat/setup.R:78:8
344s
344s [ FAIL 6 | WARN 488 | SKIP 0 | PASS 3372 ]
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-biocneighbors/34918493/log.gz
--- End Message ---
--- Begin Message ---
Source: r-bioc-biocneighbors
Source-Version: 1.18.0+ds-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
r-bioc-biocneighbors, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1039...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated r-bioc-biocneighbors
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 21 Jul 2023 10:11:46 +0200
Source: r-bioc-biocneighbors
Architecture: source
Version: 1.18.0+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 1039634
Changes:
r-bioc-biocneighbors (1.18.0+ds-1) unstable; urgency=medium
.
* Team upload.
* Rebuild against latest r-base
Closes: #1039634
* Standards-Version: 4.6.2 (routine-update)
* Reduce piuparts noise in transitions (routine-update)
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r-bioc-biocneighbors_1.18.0+ds-1.debian.tar.xz
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