Your message dated Thu, 25 May 2023 13:50:29 +0000 with message-id <e1q2bml-002yf1...@fasolo.debian.org> and subject line Bug#1036743: fixed in kleborate 2.3.1-2 has caused the Debian Bug report #1036743, regarding kleborate: debsums reports modified files after apt-get upgrade && apt-get dist-upgrade to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1036743: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1036743 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: kleborate Version: 2.3.1-1 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed debsums reporting modified files after a 2-stage upgrade from bullseye to bookworm: apt-get upgrade apt-get dist-upgrade (It does not happen if only a single-stage apt-get dist-upgrade is used) kleborate gets upgraded during the first stage, 'apt-get upgrade'. >From the attached log (scroll to the bottom...): 2m4.4s ERROR: FAIL: debsums reports modifications inside the chroot: /usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.ndb /usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.ntf /usr/lib/python3/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta.ndb /usr/lib/python3/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta.ntf /usr/lib/python3/dist-packages/kleborate/data/MgrB_and_PmrB.fasta.ndb /usr/lib/python3/dist-packages/kleborate/data/MgrB_and_PmrB.fasta.ntf /usr/lib/python3/dist-packages/kleborate/data/OmpK.fasta.ndb /usr/lib/python3/dist-packages/kleborate/data/OmpK.fasta.ntf /usr/lib/python3/dist-packages/kleborate/data/QRDR_120.fasta.ndb /usr/lib/python3/dist-packages/kleborate/data/QRDR_120.fasta.ntf /usr/lib/python3/dist-packages/kleborate/data/clb_alleles.fasta.ndb /usr/lib/python3/dist-packages/kleborate/data/clb_alleles.fasta.ntf /usr/lib/python3/dist-packages/kleborate/data/iro_alleles.fasta.ndb /usr/lib/python3/dist-packages/kleborate/data/iro_alleles.fasta.ntf /usr/lib/python3/dist-packages/kleborate/data/iuc_alleles.fasta.ndb /usr/lib/python3/dist-packages/kleborate/data/iuc_alleles.fasta.ntf /usr/lib/python3/dist-packages/kleborate/data/rmpA2.fasta.ndb /usr/lib/python3/dist-packages/kleborate/data/rmpA2.fasta.ntf /usr/lib/python3/dist-packages/kleborate/data/rmp_alleles.fasta.ndb /usr/lib/python3/dist-packages/kleborate/data/rmp_alleles.fasta.ntf /usr/lib/python3/dist-packages/kleborate/data/wzi.fasta.ndb /usr/lib/python3/dist-packages/kleborate/data/wzi.fasta.ntf /usr/lib/python3/dist-packages/kleborate/data/ybt_alleles.fasta.ndb /usr/lib/python3/dist-packages/kleborate/data/ybt_alleles.fasta.ntf cheers, Andreas
kleborate_2.3.1-1.log.gz
Description: application/gzip
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--- Begin Message ---Source: kleborate Source-Version: 2.3.1-2 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of kleborate, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1036...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated kleborate package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 25 May 2023 14:48:18 +0200 Source: kleborate Architecture: source Version: 2.3.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 1036743 Changes: kleborate (2.3.1-2) unstable; urgency=medium . * d/{rules,*.prerm}: cleanup .fasta.{ndb,ntf} files kleborate binary package used to embed autogenerated files depending on makeblastdb version at both build time and postinst time. When there is a discrepancy of makeblastdb version between the package build and the package installation, for instance during a major operating system upgrade, there can be a mismatch of int the .fasta.ndb and .fasta.ntf files produced and expected. This change gets rid of the build time artifacts to solely rely on the post-installation artifacts, which will be more consistent and won't break the package consistency. (Closes: #1036743) Checksums-Sha1: 596718da0ccfd8371ccb09870c361914727a4665 2321 kleborate_2.3.1-2.dsc fc580d9e2c38f21151677b3fc747a6c6e2facca0 5996392 kleborate_2.3.1-2.debian.tar.xz Checksums-Sha256: 7b7a5c0e6f2b2b0bc19792f049efde438af0dfa43b7443f2b5bfbf224a7ad3e7 2321 kleborate_2.3.1-2.dsc 0dfe70cdc650e530d3fdad90d1196a23d13cf04a6990c8a656781a87e2bbf255 5996392 kleborate_2.3.1-2.debian.tar.xz Files: 360cb5237d698025d3c8f83cf43f63a6 2321 science optional kleborate_2.3.1-2.dsc 45970d991da5a484fd90f8e378254345 5996392 science optional kleborate_2.3.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmRvZEAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpeXw//RKvejiSbGm+92HHwBcFkGks3Xo/C x7gc3wYA1cjDnxem082UGTWGp9EFyCr6x/0lS7ayTiVVrjUcflJc5STtEyEDRLi+ HwbHSDGaB/34CTD59aNUgYleDhTafgvKkH8hBARWj2BnOXKY0Udga7gWvADomygM tMwJdnRjwvYchhmib0aEyoQ3jJ8DminjiqcA9nweKzOhXKYrtAZIPmmvk0DvF6Yy M2t1oJsZJKve/Sb73nZYUPkgZTo1TPKnxjES61vS7ypRfj2H9yzJy1SBQGYFJfaw bpPuDS6buYYb5YytUnsxcACNHRvxk8lX2WvksLrtdeVBFBzXMyyDdqDMm0ne5Lpc rKJGNxbz0tBzos+QANu4Ned5GWEQJGE/ZQHAUIR3mZK7xcw2F7pLiwRXHXkfYJCt CjqhiU+LI7pB5pBJHgi6i9oORYk325VSjKngtdlzGWIl7OcUq51AqrfyPScFmJEN gjA4aTRQkITbPxk9q/oO3dER/wwUfgcST9SY4mTEs5ESAC3gIk977cBTNMBlBaRR Oul4owVAED+BWpqjVqdPZzHk8tNGTbeII7oL5uk2wEGBNT86lf0Ys1dE9YPcZ1ni B72liixhe7QSIzAmsDSpbXOjXFXaldMX8qqlz/ghJIXn6YU5rJ/s4VVoUGWF6yNY HXvzYyVhEuAHj+0= =F4Ok -----END PGP SIGNATURE-----
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