Your message dated Wed, 01 Feb 2023 21:23:22 +0000 with message-id <e1pnkze-009e4c...@fasolo.debian.org> and subject line Bug#1027217: fixed in python-pymbar 3.1.0-4 has caused the Debian Bug report #1027217, regarding python-pymbar: autopkgtest fail with numpy/1.24.1 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1027217: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1027217 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-pymbar Severity: important User: debian-pyt...@lists.debian.org Usertags: numpy1.24 Hello, recently numpy/1.24.1 has been uploaded to experimental, and this package autopkgtest fail when running against it. An overview of the upstream changes in the 1.24.x series is available at: https://numpy.org/doc/stable/release/1.24.0-notes.html Several of the errors are in the form of: AttributeError: module 'numpy' has no attribute 'X' with X in [float, int, bool, object, ...]. This is because, numpy upstream in 1.24.0, finally decided to expire https://numpy.org/doc/stable/release/1.24.0-notes.html#:~:text=The%20deprecation%20for%20the%20aliases some deprecations introduced in 1.20.0 https://numpy.org/doc/stable/release/1.20.0-notes.html#using-the-aliases-of-builtin-types-like-np-int-is-deprecated (released almost 2 years ago). All of those are quite straightforward to fix, since often it's just necessary to stop importing them from numpy and use the python native types. Other changes may requires a bit more rework to be addressed. Currently numpy/1.24.x is in experimental, but given the possible longer support that it'll receive from upstream, we're hopeful to include this in bookworm, so your help is necessary to address this bug ASAP. Regards, Sandro
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--- Begin Message ---Source: python-pymbar Source-Version: 3.1.0-4 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of python-pymbar, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1027...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated python-pymbar package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Wed, 01 Feb 2023 21:30:52 +0100 Source: python-pymbar Architecture: source Version: 3.1.0-4 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <debian-science-maintain...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 1027217 Changes: python-pymbar (3.1.0-4) unstable; urgency=medium . * Team upload. . [ Bas Couwenberg ] * Add gbp.conf to use pristine-tar & --source-only-changes by default. * Add patch to fix test failure with Numpy 1.24. (closes: #1027217) . [ Étienne Mollier ] * Update standards version to 4.6.2, no changes needed. Checksums-Sha1: ba73a6e92c2b85f5711cfdb3beb4654e6e4b856d 2363 python-pymbar_3.1.0-4.dsc bf17acf1c361e84b93321b61eaeaf27e8e5a545e 3916 python-pymbar_3.1.0-4.debian.tar.xz Checksums-Sha256: 92ec73391fe0f1f8351949ad385cf99e5dd9acf7728271cf9b5e05fff8e60a3e 2363 python-pymbar_3.1.0-4.dsc 48e8c600c6255eea09141fbc854682a3ed2a317e103f5ff0318253937568a4a7 3916 python-pymbar_3.1.0-4.debian.tar.xz Files: d777c9c9123ab88b25b582cdf834a8cf 2363 science optional python-pymbar_3.1.0-4.dsc b8aa16ff3c8c93808d92ecb163f00a76 3916 science optional python-pymbar_3.1.0-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmPa0zUUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqbSg//V4klDpXqVCad8AdyoJBs3Ov6H7B3 X7b1vrzdyotrq48W9dijUygMnB1IJY9GLviOnvU41matqi0xy00xCx1OojXv+y+j RFbe6x9HHf9MwApryixb0cFWcPXwf9QSQn7CZ2/1geC8a3J1R14dFjnlAYSy3YiP p1/G3tEg9rlodo0pbBDCELtOQ8a1VFtT7WDFcFUIne52GzWRdktt0AojwCUykDG/ EOFp3x7V+ir8zuqTr54vUXZ9QJy5ARH4jR/8Py0h3HVQsGFBimFDMWwIRcVie9BY wfymjyHFNg+zb6vEZbV3cyvFt68pfEXdQB21SJenLmQEC08X8UugMam/+kHK1pGv Q8P+HsIcmbBPic3RUREbyoXxi2vo30efhWyEybC5LpV0BSvTssVEOO/Na5ODBb2f kobyatyv/enwl37uJRci8GvIwpNzYltbndQH8dCSyf4KwblsTaq6y3/ZzfPUUgvk AL0lsFjv+tmbnKmkOhp15asKW2sK/9ar5t3tcMzyF5pCpsbn4CllKA2ADpk2bCgz fzUMYKbtyEHaxBORRFXn++Gnbi0enfeVkwDwqLdBNAcW/WumLpDalXsWkjZbRXnS JzVbehlVHDjI5IYPJa5DO06Tfj9jLX7qurHksbhrkA5YMcOJttp9q0tt0mj1lVoH Pl8XXalRRfcZPnw= =Gh3t -----END PGP SIGNATURE-----
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