Your message dated Thu, 19 Jan 2023 03:07:05 +0000 with message-id <e1pilgb-00btdt...@fasolo.debian.org> and subject line Bug#1024155: fixed in sra-sdk 3.0.3+dfsg-1 has caused the Debian Bug report #1024155, regarding libngs-c++-dev: missing Breaks+Replaces: libncbi-vdb-dev (<< 3), libngs-sdk-dev (<< 3) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1024155: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1024155 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libngs-c++-dev Version: 3.0.0+dfsg-1 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'sid' to 'experimental'. It installed fine in 'sid', then the upgrade to 'experimental' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. This error may also be triggered by having a predecessor package from 'sid 'installed while installing the package from 'experimental'. See policy 7.6 at https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces >From the attached log (scroll to the bottom...): Preparing to unpack .../libngs-c++-dev_3.0.0+dfsg-1_amd64.deb ... Unpacking libngs-c++-dev:amd64 (3.0.0+dfsg-1) ... dpkg: error processing archive /var/cache/apt/archives/libngs-c++-dev_3.0.0+dfsg-1_amd64.deb (--unpack): trying to overwrite '/usr/include/ngs/Alignment.hpp', which is also in package libngs-sdk-dev:amd64 2.11.2-4 Errors were encountered while processing: /var/cache/apt/archives/libngs-c++-dev_3.0.0+dfsg-1_amd64.deb Preparing to unpack .../libngs-c++-dev_3.0.0+dfsg-1_amd64.deb ... Unpacking libngs-c++-dev:amd64 (3.0.0+dfsg-1) ... dpkg: error processing archive /var/cache/apt/archives/libngs-c++-dev_3.0.0+dfsg-1_amd64.deb (--unpack): trying to overwrite '/usr/lib/x86_64-linux-gnu/libncbi-ngs-c++.a', which is also in package libncbi-vdb-dev:amd64 2.11.2+dfsg-6 Errors were encountered while processing: /var/cache/apt/archives/libngs-c++-dev_3.0.0+dfsg-1_amd64.deb cheers, Andreas
libncbi-vdb-dev=2.11.2+dfsg-6_libngs-c++-dev=3.0.0+dfsg-1.log.gz
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--- Begin Message ---Source: sra-sdk Source-Version: 3.0.3+dfsg-1 Done: Aaron M. Ucko <u...@debian.org> We believe that the bug you reported is fixed in the latest version of sra-sdk, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1024...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Aaron M. Ucko <u...@debian.org> (supplier of updated sra-sdk package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Wed, 18 Jan 2023 21:42:39 -0500 Source: sra-sdk Architecture: source Version: 3.0.3+dfsg-1 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Aaron M. Ucko <u...@debian.org> Closes: 1024155 1025278 Changes: sra-sdk (3.0.3+dfsg-1) experimental; urgency=medium . [ Andreas Tille ] * Breaks+Replaces: libncbi-vdb-dev (<< 3), libngs-sdk-dev (<< 3) Closes: #1024155 . [ Aaron M. Ucko ] * New upstream version. * .gitignore: - Unhardcode architecture name in build tree (obj-*). - Ignore build results under ngs/ngs-python (dist, ngs.egg-info). * debian/{control,salsa-ci.yml}: Build against libncbi-vdb-dev 3.0.1+. * debian/copyright: Account for layout changes as of 3.0.1 and drop references to content removed upstream, both in Files-Excluded and in special cases. * debian/patches: Update for 3.0.1+; in particular, account for layout changes and better support for using system libraries. * debian/rules: - Correctly accommodate multiple supported Python versions. (I'd insufficiently adapted ncbi-ngs's relevant logic.) - Account for layout changes and CMAKE_INSTALL_LIBDIR support (with the latter yielding multiarch paths). - Clean up newly generated files under ngs/ngs-python. * debian/{rules,sra-toolkit.install}: Move sratools and *-orig to a new /usr/lib/sra-toolkit directory; repoint symlinks accordingly. (Closes: #1025278.) * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: ef8c4f0363de50f7347cf344efb496cb35eadf6c 2825 sra-sdk_3.0.3+dfsg-1.dsc 127a4447065a5467c49defc69f8d8ecdf53766c0 31772584 sra-sdk_3.0.3+dfsg.orig.tar.xz 8919091c8f8e026a019eb74da8b2e9b2d0fb902b 3782044 sra-sdk_3.0.3+dfsg-1.debian.tar.xz d9abc7184ea76e85e9128b1e3f988178c816e96a 22047 sra-sdk_3.0.3+dfsg-1_source.buildinfo Checksums-Sha256: b1f9bf1db7a69445199011472bafea4b4e5b7b4dcc5aff1fa2258a78809da4df 2825 sra-sdk_3.0.3+dfsg-1.dsc 1849cf932d6ec5c03577c184af7e286f6f5b9469ac1066d5a795fd02c9d842bc 31772584 sra-sdk_3.0.3+dfsg.orig.tar.xz 7907f809f93a2ac5e58318771d866a8a4decbcf7eb4e36c64dde9d29fe67d6fd 3782044 sra-sdk_3.0.3+dfsg-1.debian.tar.xz 9102bf7a29a68e1393c14eea822603d2dc1b02982fa0517c407bbbb73608ccd3 22047 sra-sdk_3.0.3+dfsg-1_source.buildinfo Files: ab07c4d994b2d731b80208c5073c3f1a 2825 science optional sra-sdk_3.0.3+dfsg-1.dsc 86394b657c4db9237d0072a66ee3f894 31772584 science optional sra-sdk_3.0.3+dfsg.orig.tar.xz 56edd7438582c2b642379609aac2b5a8 3782044 science optional sra-sdk_3.0.3+dfsg-1.debian.tar.xz 3e810fb445e4af729b9e5c867f3cd400 22047 science optional sra-sdk_3.0.3+dfsg-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEfDq5z9IwvTDdAJxZHnCRsfFKZKIFAmPIsBYACgkQHnCRsfFK ZKLi7Q//fyL7MTkntJg10Nw2UcaOI/Raz8FEUx7vO1Czs9UQrjL16fMBN6Yz7xbA 57mkDhSXjPZ+tt4sQmJJgdOLppnb9aUF4oN5yOaFRBLBy6c97QihI0ciQjK5Xe+k V2wKiit0eJ57CM9jdHVXFzHx+vvoIhNwIdVrTLu0GWuRrYNedHYWEq2/3Lc4V2TQ Em/XMHKrXACVnPnDv74eJpyxDtgOd/cRUF331qUeNsU8DyPhKjt3wVW6HZoSDMGZ eXtXIfD9i7H1FB5Zq2jcQFVs93zUrU1zzyTYAaCd4MCYlSkHwldb8MfcJ57TYJPF vU+ioDnxVdMgVL0/hpMafYPblGMRg0kuLwe6TcBYZBmLU6NnMc+A2WWYSBpDRHyR Qp6iWzZi07SfvmXCNQnP4CRj6QduySSU+xDCuj6zTVwn6/doH/BBv/FS7i8LGytu 9AkePGGXoQLUfER9o2/u9i/VarFchyviPiuRArHcWrJRlVbFuLFD4mpzrjMxVrv0 NddwI7ns3PdcklbVwu6Wa8vrdwEuk9vP9zCbdtCIP+g6c5PVZq8orE2azq4H8A7Q fqiiZ1ljoMyJMGbBxFgyOezEG8Gtn2UvmbV7J4Hu6luiOqULz4cnC6ssSlyc/y5p WdWHZP/Be7jW/w8f6gW+x9WDutldZhU1I5JS42TLRZxgHR6Y7Xc= =6emD -----END PGP SIGNATURE-----
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