Your message dated Thu, 12 Jan 2023 11:35:32 +0000 with message-id <e1pfvro-00bemr...@fasolo.debian.org> and subject line Bug#1027233: fixed in prody 2.3.1+dfsg-3 has caused the Debian Bug report #1027233, regarding prody: autopkgtest fail with numpy/1.24.1 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1027233: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1027233 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: prody Severity: important User: debian-pyt...@lists.debian.org Usertags: numpy1.24 Hello, recently numpy/1.24.1 has been uploaded to experimental, and this package autopkgtest fail when running against it. An overview of the upstream changes in the 1.24.x series is available at: https://numpy.org/doc/stable/release/1.24.0-notes.html Several of the errors are in the form of: AttributeError: module 'numpy' has no attribute 'X' with X in [float, int, bool, object, ...]. This is because, numpy upstream in 1.24.0, finally decided to expire https://numpy.org/doc/stable/release/1.24.0-notes.html#:~:text=The%20deprecation%20for%20the%20aliases some deprecations introduced in 1.20.0 https://numpy.org/doc/stable/release/1.20.0-notes.html#using-the-aliases-of-builtin-types-like-np-int-is-deprecated (released almost 2 years ago). All of those are quite straightforward to fix, since often it's just necessary to stop importing them from numpy and use the python native types. Other changes may requires a bit more rework to be addressed. Currently numpy/1.24.x is in experimental, but given the possible longer support that it'll receive from upstream, we're hopeful to include this in bookworm, so your help is necessary to address this bug ASAP. Regards, Sandro
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--- Begin Message ---Source: prody Source-Version: 2.3.1+dfsg-3 Done: Andrius Merkys <mer...@debian.org> We believe that the bug you reported is fixed in the latest version of prody, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1027...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andrius Merkys <mer...@debian.org> (supplier of updated prody package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 12 Jan 2023 06:08:16 -0500 Source: prody Architecture: source Version: 2.3.1+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Andrius Merkys <mer...@debian.org> Closes: 1027233 Changes: prody (2.3.1+dfsg-3) unstable; urgency=medium . * Add patch to fix test failure with Numpy 1.24 (Closes: #1027233). Thanks Sebastiaan Couwenberg. Checksums-Sha1: 49c43400e7366edd4ea1b9b6434d943caca0ebea 2235 prody_2.3.1+dfsg-3.dsc b94a7fafa50f2c7000990fe668de3d144ae5c580 5860 prody_2.3.1+dfsg-3.debian.tar.xz a5c9569b362985c793c482e1e8a2b52962df4432 10193 prody_2.3.1+dfsg-3_source.buildinfo Checksums-Sha256: e6ccfbf8325d81e44c6a031edcb2a3ee85b849a4b590a84378de1c1568521a1e 2235 prody_2.3.1+dfsg-3.dsc a91b295381a85cb3e9640ea415a005c3c502c35dfe8199dd68f48dbbeaefe6ca 5860 prody_2.3.1+dfsg-3.debian.tar.xz 3fd8caccb920e884516b7747bde14a8c8ce6dda19e2f69a299ac976777fc491f 10193 prody_2.3.1+dfsg-3_source.buildinfo Files: c88ce761c82f48f1f7b45f6e87b17509 2235 science optional prody_2.3.1+dfsg-3.dsc f5806f680b8388bb8cdacb8bfff508a8 5860 science optional prody_2.3.1+dfsg-3.debian.tar.xz e755787beb062ea332011e7aa9642ac7 10193 science optional prody_2.3.1+dfsg-3_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmO/6qISHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHgcEQAIbaiz0+LVaoMqZpJO7TCuDgDcY8ToGn TwYgNxwJZT2dcXQ+p9yU5CMCoFFV6kFPoVxB9X8cVpV45qNnQkUZvTbXnqptwohz Hfc5ncZHlh5Vx2OVeTG0v8o6/VZCRL3tfQHPXGrepoBSGY45HFDPWlcFTSl/g7TT HPO9FCt7z+KHdT8Ghf/ixuE/Osv+62Ou6XjNlVIc1cRBHJUDCDAPKhGMjCzCL5eZ oSMZTXmYD4Ot3dmvNpLcJdjw2kZ2MTWlvQHXw4LrimJIMb9TJ9UxO6dQC4XMzSZH prMp6SIuwWKm3/JUiX8Nn87Rp6Fy9WgRqn3oobnRw3ql2Js4NzLAjPapYSxDhTuy jGZ+xKWI/fzgQnn5DeDYuYcTCwe+CeSaTXiAACDFlhytgzJGMgS6Xuq3VMMg9tuG 4wMDi6T8wOyNHNX1WvVS7WCtVRs6g7VdbaGlILXvazhBzQoFPa3oqJj8TQ2s4BRh 7Eow3/pOXOTuS2b8F5rek4je+VFMzM9/XFSyt4m8Ox4XwaP+wwPupbcutV3PD/Id sGZK/fq5c8IrjVf1iT5Iku5hL76qkaAnp3VQ6xgVUY9z0SEvBgNmqJir1ymWRzX2 nK7IGrB8NxZWkauBJI/i/oFGdQhq1Y5bFHH/boYQbLLhq3DPydRvJIWMyR2Nl0i5 rIuEvUrgNME+ =rvaO -----END PGP SIGNATURE-----
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