Bug#1026720: marked as done (spectral-cube: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.11 3.10" returned exit code 13)

Debian Bug Tracking System Wed, 04 Jan 2023 02:57:25 -0800

Your message dated Wed, 04 Jan 2023 10:55:05 +0000
with message-id <e1pd1qh-0021en...@fasolo.debian.org>
and subject line Bug#1026720: fixed in spectral-cube 0.6.0-2
has caused the Debian Bug report #1026720,
regarding spectral-cube: FTBFS: dh_auto_test: error: pybuild --test 
--test-pytest -i python{version} -p "3.11 3.10" returned exit code 13
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1026720: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1026720
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Source: spectral-cube
Version: 0.6.0-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20221220 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_test
> I: pybuild base:240: cd 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_spectral-cube/build; python3.11 -m 
> pytest 
> ============================= test session starts 
> ==============================
> platform linux -- Python 3.11.1, pytest-7.2.0, pluggy-1.0.0+repack
> rootdir: /<<PKGBUILDDIR>>, configfile: setup.cfg
> plugins: astropy-header-0.2.2, doctestplus-0.12.1, mock-3.8.2, 
> filter-subpackage-0.1.1, cov-4.0.0, arraydiff-0.5.0, hypothesis-6.60.0, 
> astropy-0.10.0, openfiles-0.5.0, remotedata-0.3.3
> collected 1653 items
> 
> spectral_cube/spectral_axis.py .                                         [  
> 0%]
> spectral_cube/tests/test_analysis_functions.py .................         [  
> 1%]
> spectral_cube/tests/test_casafuncs.py ......ssssssssssssss               [  
> 2%]
> spectral_cube/tests/test_cube_utils.py .......                           [  
> 2%]
> spectral_cube/tests/test_dask.py .s..s..                                 [  
> 3%]
> spectral_cube/tests/test_io.py ....................                      [  
> 4%]
> spectral_cube/tests/test_masks.py ...................................... [  
> 6%]
> ...............................................XX....                    [  
> 9%]
> spectral_cube/tests/test_moments.py .................................... [ 
> 12%]
> ........................................................................ [ 
> 16%]
> ........................................................................ [ 
> 20%]
> ........                                                                 [ 
> 21%]
> spectral_cube/tests/test_performance.py ...s..                           [ 
> 21%]
> spectral_cube/tests/test_projection.py .......................x......... [ 
> 23%]
> .....xxx.......x........................................................ [ 
> 27%]
> ......................                                                   [ 
> 29%]
> spectral_cube/tests/test_regrid.py ......ssssFF..s...............sss.... [ 
> 31%]
> s                                                                        [ 
> 31%]
> spectral_cube/tests/test_spectral_axis.py .............................. [ 
> 33%]
> ......................                                                   [ 
> 34%]
> spectral_cube/tests/test_spectral_cube.py .............................. [ 
> 36%]
> ........................................................................ [ 
> 40%]
> ........................................................................ [ 
> 45%]
> ........................................................................ [ 
> 49%]
> ............s.....s...........sssss..................................... [ 
> 53%]
> ............ssssss......................ss.............................. [ 
> 58%]
> ........................................................................ [ 
> 62%]
> ....................ssssss......ssssssssssss......ssssssssssss......ssss [ 
> 67%]
> ssssssss......ssssssssssss......ssssss.................................. [ 
> 71%]
> ........................................................ssssss......ssss [ 
> 75%]
> ssssssss......ssssssssssss......ssssssssssss......ssssssssssss......ssss [ 
> 80%]
> ss.................................s.s..............xxxx................ [ 
> 84%]
> ..................................................ssss.................. [ 
> 88%]
> ..........xxxxxxxx......sss......................                        [ 
> 91%]
> spectral_cube/tests/test_stokes_spectral_cube.py ....................... [ 
> 93%]
> ...................................................................      [ 
> 97%]
> spectral_cube/tests/test_subcubes.py ..ssssssssssssssssssss              [ 
> 98%]
> spectral_cube/tests/test_visualization.py ....ssssssss                   [ 
> 99%]
> spectral_cube/tests/test_wcs_utils.py ............                       
> [100%]
> 
> =================================== FAILURES 
> ===================================
> _________________________ test_spectral_smooth[False] 
> __________________________
> 
> data_522_delta = 
> PosixPath('/tmp/pytest-of-user42/pytest-1/test_spectral_smooth_False_0/522_delta.fits')
> use_dask = False
> 
>     def test_spectral_smooth(data_522_delta, use_dask):
>     
>         cube, data = cube_and_raw(data_522_delta, use_dask=use_dask)
>     
>         result = 
> cube.spectral_smooth(kernel=convolution.Gaussian1DKernel(1.0), 
> use_memmap=False)
>     
> >       np.testing.assert_almost_equal(result[:,0,0].value,
>                                        convolution.Gaussian1DKernel(1.0,
>                                                                     
> x_size=5).array,
>                                        4)
> E       AssertionError: 
> E       Arrays are not almost equal to 4 decimals
> E       
> E       Mismatched elements: 5 / 5 (100%)
> E       Max absolute difference: 0.00367648
> E       Max relative difference: 0.00913138
> E        x: array([0.054 , 0.242 , 0.3989, 0.242 , 0.054 ])
> E        y: array([0.0545, 0.2442, 0.4026, 0.2442, 0.0545])
> 
> spectral_cube/tests/test_regrid.py:131: AssertionError
> __________________________ test_spectral_smooth[True] 
> __________________________
> 
> data_522_delta = 
> PosixPath('/tmp/pytest-of-user42/pytest-1/test_spectral_smooth_True_0/522_delta.fits')
> use_dask = True
> 
>     def test_spectral_smooth(data_522_delta, use_dask):
>     
>         cube, data = cube_and_raw(data_522_delta, use_dask=use_dask)
>     
>         result = 
> cube.spectral_smooth(kernel=convolution.Gaussian1DKernel(1.0), 
> use_memmap=False)
>     
> >       np.testing.assert_almost_equal(result[:,0,0].value,
>                                        convolution.Gaussian1DKernel(1.0,
>                                                                     
> x_size=5).array,
>                                        4)
> E       AssertionError: 
> E       Arrays are not almost equal to 4 decimals
> E       
> E       Mismatched elements: 5 / 5 (100%)
> E       Max absolute difference: 0.00367648
> E       Max relative difference: 0.00913138
> E        x: array([0.054 , 0.242 , 0.3989, 0.242 , 0.054 ])
> E        y: array([0.0545, 0.2442, 0.4026, 0.2442, 0.0545])
> 
> spectral_cube/tests/test_regrid.py:131: AssertionError
> =========================== short test summary info 
> ============================
> FAILED spectral_cube/tests/test_regrid.py::test_spectral_smooth[False] - 
> Asse...
> FAILED spectral_cube/tests/test_regrid.py::test_spectral_smooth[True] - 
> Asser...
> = 2 failed, 1434 passed, 198 skipped, 17 xfailed, 2 xpassed in 534.41s 
> (0:08:54) =
> E: pybuild pybuild:386: test: plugin distutils failed with: exit code=1: cd 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_spectral-cube/build; python3.11 -m 
> pytest 
> I: pybuild base:240: cd 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_spectral-cube/build; python3.10 -m 
> pytest 
> ============================= test session starts 
> ==============================
> platform linux -- Python 3.10.9, pytest-7.2.0, pluggy-1.0.0+repack
> rootdir: /<<PKGBUILDDIR>>, configfile: setup.cfg
> plugins: astropy-header-0.2.2, doctestplus-0.12.1, mock-3.8.2, 
> filter-subpackage-0.1.1, cov-4.0.0, arraydiff-0.5.0, hypothesis-6.60.0, 
> astropy-0.10.0, openfiles-0.5.0, remotedata-0.3.3
> collected 1653 items
> 
> spectral_cube/spectral_axis.py .                                         [  
> 0%]
> spectral_cube/tests/test_analysis_functions.py .................         [  
> 1%]
> spectral_cube/tests/test_casafuncs.py ......ssssssssssssss               [  
> 2%]
> spectral_cube/tests/test_cube_utils.py .......                           [  
> 2%]
> spectral_cube/tests/test_dask.py .s..s..                                 [  
> 3%]
> spectral_cube/tests/test_io.py ....................                      [  
> 4%]
> spectral_cube/tests/test_masks.py ...................................... [  
> 6%]
> ...............................................XX....                    [  
> 9%]
> spectral_cube/tests/test_moments.py .................................... [ 
> 12%]
> ........................................................................ [ 
> 16%]
> ........................................................................ [ 
> 20%]
> ........                                                                 [ 
> 21%]
> spectral_cube/tests/test_performance.py ...s..                           [ 
> 21%]
> spectral_cube/tests/test_projection.py .......................x......... [ 
> 23%]
> .....xxx.......x........................................................ [ 
> 27%]
> ......................                                                   [ 
> 29%]
> spectral_cube/tests/test_regrid.py ......ssssFF..s...............sss.... [ 
> 31%]
> s                                                                        [ 
> 31%]
> spectral_cube/tests/test_spectral_axis.py .............................. [ 
> 33%]
> ......................                                                   [ 
> 34%]
> spectral_cube/tests/test_spectral_cube.py .............................. [ 
> 36%]
> ........................................................................ [ 
> 40%]
> ........................................................................ [ 
> 45%]
> ........................................................................ [ 
> 49%]
> ............s.....s...........sssss..................................... [ 
> 53%]
> ............ssssss......................ss.............................. [ 
> 58%]
> ........................................................................ [ 
> 62%]
> ....................ssssss......ssssssssssss......ssssssssssss......ssss [ 
> 67%]
> ssssssss......ssssssssssss......ssssss.................................. [ 
> 71%]
> ........................................................ssssss......ssss [ 
> 75%]
> ssssssss......ssssssssssss......ssssssssssss......ssssssssssss......ssss [ 
> 80%]
> ss.................................s.s..............xxxx................ [ 
> 84%]
> ..................................................ssss.................. [ 
> 88%]
> ..........xxxxxxxx......sss......................                        [ 
> 91%]
> spectral_cube/tests/test_stokes_spectral_cube.py ....................... [ 
> 93%]
> ...................................................................      [ 
> 97%]
> spectral_cube/tests/test_subcubes.py ..ssssssssssssssssssss              [ 
> 98%]
> spectral_cube/tests/test_visualization.py ....ssssssss                   [ 
> 99%]
> spectral_cube/tests/test_wcs_utils.py ............                       
> [100%]
> 
> =================================== FAILURES 
> ===================================
> _________________________ test_spectral_smooth[False] 
> __________________________
> 
> data_522_delta = 
> PosixPath('/tmp/pytest-of-user42/pytest-2/test_spectral_smooth_False_0/522_delta.fits')
> use_dask = False
> 
>     def test_spectral_smooth(data_522_delta, use_dask):
>     
>         cube, data = cube_and_raw(data_522_delta, use_dask=use_dask)
>     
>         result = 
> cube.spectral_smooth(kernel=convolution.Gaussian1DKernel(1.0), 
> use_memmap=False)
>     
> >       np.testing.assert_almost_equal(result[:,0,0].value,
>                                        convolution.Gaussian1DKernel(1.0,
>                                                                     
> x_size=5).array,
>                                        4)
> E       AssertionError: 
> E       Arrays are not almost equal to 4 decimals
> E       
> E       Mismatched elements: 5 / 5 (100%)
> E       Max absolute difference: 0.00367648
> E       Max relative difference: 0.00913138
> E        x: array([0.054 , 0.242 , 0.3989, 0.242 , 0.054 ])
> E        y: array([0.0545, 0.2442, 0.4026, 0.2442, 0.0545])
> 
> spectral_cube/tests/test_regrid.py:131: AssertionError
> __________________________ test_spectral_smooth[True] 
> __________________________
> 
> data_522_delta = 
> PosixPath('/tmp/pytest-of-user42/pytest-2/test_spectral_smooth_True_0/522_delta.fits')
> use_dask = True
> 
>     def test_spectral_smooth(data_522_delta, use_dask):
>     
>         cube, data = cube_and_raw(data_522_delta, use_dask=use_dask)
>     
>         result = 
> cube.spectral_smooth(kernel=convolution.Gaussian1DKernel(1.0), 
> use_memmap=False)
>     
> >       np.testing.assert_almost_equal(result[:,0,0].value,
>                                        convolution.Gaussian1DKernel(1.0,
>                                                                     
> x_size=5).array,
>                                        4)
> E       AssertionError: 
> E       Arrays are not almost equal to 4 decimals
> E       
> E       Mismatched elements: 5 / 5 (100%)
> E       Max absolute difference: 0.00367648
> E       Max relative difference: 0.00913138
> E        x: array([0.054 , 0.242 , 0.3989, 0.242 , 0.054 ])
> E        y: array([0.0545, 0.2442, 0.4026, 0.2442, 0.0545])
> 
> spectral_cube/tests/test_regrid.py:131: AssertionError
> =========================== short test summary info 
> ============================
> FAILED spectral_cube/tests/test_regrid.py::test_spectral_smooth[False] - 
> Asse...
> FAILED spectral_cube/tests/test_regrid.py::test_spectral_smooth[True] - 
> Asser...
> = 2 failed, 1434 passed, 198 skipped, 17 xfailed, 2 xpassed in 392.76s 
> (0:06:32) =
> E: pybuild pybuild:386: test: plugin distutils failed with: exit code=1: cd 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_spectral-cube/build; python3.10 -m 
> pytest 
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.11 
> 3.10" returned exit code 13


The full build log is available from:
http://qa-logs.debian.net/2022/12/20/spectral-cube_0.6.0-1_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20221220;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20221220&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

--- End Message ---

--- Begin Message ---

Source: spectral-cube
Source-Version: 0.6.0-2
Done: Ole Streicher <oleb...@debian.org>

We believe that the bug you reported is fixed in the latest version of
spectral-cube, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1026...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Ole Streicher <oleb...@debian.org> (supplier of updated spectral-cube package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 04 Jan 2023 10:46:03 +0100
Source: spectral-cube
Architecture: source
Version: 0.6.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Astronomy Team 
<debian-astro-maintain...@lists.alioth.debian.org>
Changed-By: Ole Streicher <oleb...@debian.org>
Closes: 1026720 1027396
Changes:
 spectral-cube (0.6.0-2) unstable; urgency=medium
 .
   * Update test_kernel_smooth to latest github version
     (Closes: #1026720, #1027396)
   * Push Standards-Version to 4.6.2, no changes needed
Checksums-Sha1:
 dadbafa581cc4ec2092fd4ae9f1ae09711c7efc3 2223 spectral-cube_0.6.0-2.dsc
 647a6db9bf7b4c34ee5d8a0ab5ec4c024d745c25 6272 
spectral-cube_0.6.0-2.debian.tar.xz
Checksums-Sha256:
 cfa2954dc276e789650869b25f025457e1ec9d106c72d3078c3ceaf848280e57 2223 
spectral-cube_0.6.0-2.dsc
 ec813c81c3ab4ca8bc508bfe526ef9021dd188a168624740289d170dc4cf4b29 6272 
spectral-cube_0.6.0-2.debian.tar.xz
Files:
 f564ac6262cbbece395da687f62fbc5a 2223 python optional spectral-cube_0.6.0-2.dsc
 85c67d80f809af70c63962dfea9c1241 6272 python optional 
spectral-cube_0.6.0-2.debian.tar.xz

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--- End Message ---

Bug#1026720: marked as done (spectral-cube: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.11 3.10" returned exit code 13)

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