Source: scipy, scikit-learn Control: found -1 scipy/1.8.1-18 Control: found -1 scikit-learn/1.1.2+dfsg-91 Severity: serious Tags: sid bookworm User: debian...@lists.debian.org Usertags: breaks needs-update
Dear maintainer(s),With a recent upload of scipy the autopkgtest of scikit-learn fails in testing when that autopkgtest is run with the binary packages of scipy from unstable. It passes when run with only packages from testing. In tabular form:
pass fail
scipy from testing 1.8.1-18
scikit-learn from testing 1.1.2+dfsg-91
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of scipy to testing
[1]. Due to the nature of this issue, I filed this bug report against
both packages. Can you please investigate the situation and reassign the
bug to the right package?
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=scipy https://ci.debian.net/data/autopkgtest/testing/amd64/s/scikit-learn/29794749/log.gz../../../../usr/lib/python3/dist-packages/sklearn/decomposition/tests/test_kernel_pca.py::test_kernel_pca_raise_not_fitted_error PASSED ../../../../usr/lib/python3/dist-packages/sklearn/decomposition/tests/test_kernel_pca.py::test_32_64_decomposition_shape PASSEDFatal Python error: Segmentation fault
Current thread 0x00007ff05b47d040 (most recent call first): File "<frozen os>", line 685 in __setitem__File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 195 in _update_current_test_var File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 178 in pytest_runtest_teardown File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in __call__ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 259 in <lambda> File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 338 in from_call File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 258 in call_runtest_hook File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 219 in call_and_report File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 131 in runtestprotocol File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 111 in pytest_runtest_protocol File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in __call__ File "/usr/lib/python3/dist-packages/_pytest/main.py", line 347 in pytest_runtestloop File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in __call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 322 in _mainFile "/usr/lib/python3/dist-packages/_pytest/main.py", line 268 in wrap_session File "/usr/lib/python3/dist-packages/_pytest/main.py", line 315 in pytest_cmdline_main File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in __call__ File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 164 in main File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 187 in console_main File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 5 in <module>
File "<frozen runpy>", line 88 in _run_code File "<frozen runpy>", line 198 in _run_module_as_mainExtension modules: sklearn.__check_build._check_build, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, scipy._lib._ccallback_c, scipy.sparse._sparsetools, scipy.sparse._csparsetools, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, sklearn.utils.murmurhash, lz4._version, lz4.frame._frame, scipy.spatial._ckdtree, scipy._lib.messagestream, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg._cythonized_array_utils, scipy.linalg._flinalg, scipy.linalg._solve_toeplitz, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg.cython_lapack, scipy.linalg._decomp_update, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.special._ufuncs_cxx, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.special._ellip_harm_2, scipy.spatial.transform._rotation, scipy.ndimage._nd_image, _ni_label, scipy.ndimage._ni_label, scipy.sparse.linalg._isolve._iterative, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.optimize._minpack2, scipy.optimize._group_columns, scipy.optimize._trlib._trlib, numpy.linalg.lapack_lite, scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC, scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack, scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros, scipy.optimize.__nnls, scipy.optimize._highs.cython.src._highs_wrapper, scipy.optimize._highs._highs_wrapper, scipy.optimize._highs.cython.src._highs_constants, scipy.optimize._highs._highs_constants, scipy.linalg._interpolative, scipy.optimize._bglu_dense, scipy.optimize._lsap_module, scipy.integrate._odepack, scipy.integrate._quadpack, scipy.integrate._vode, scipy.integrate._dop, scipy.integrate._lsoda, scipy.interpolate._fitpack, scipy.interpolate.dfitpack, scipy.interpolate._bspl, scipy.interpolate._ppoly, scipy.interpolate.interpnd, scipy.interpolate._rbfinterp_pythran, scipy.special.cython_special, scipy.stats._stats, beta_ufunc, scipy.stats._boost.beta_ufunc, binom_ufunc, scipy.stats._boost.binom_ufunc, nbinom_ufunc, scipy.stats._boost.nbinom_ufunc, hypergeom_ufunc, scipy.stats._boost.hypergeom_ufunc, scipy.stats._biasedurn, scipy.stats._hypotests_pythran, scipy.stats._statlib, scipy.stats._mvn, scipy.stats._sobol, scipy.stats._qmc_cy, scipy.stats._unuran.unuran_wrapper, sklearn.utils._openmp_helpers, sklearn.utils._logistic_sigmoid, sklearn.utils.sparsefuncs_fast, sklearn.preprocessing._csr_polynomial_expansion, sklearn.utils._vector_sentinel, sklearn.feature_extraction._hashing_fast, sklearn.utils._random, sklearn.datasets._svmlight_format_fast, scipy.io.matlab._mio_utils, scipy.io.matlab._streams, scipy.io.matlab._mio5_utils, matplotlib._c_internal_utils, PIL._imaging, matplotlib._path, kiwisolver, sklearn._loss._loss, sklearn.utils._readonly_array_wrapper, sklearn.utils._typedefs, sklearn.metrics._dist_metrics, sklearn.metrics.cluster._expected_mutual_info_fast, sklearn.utils._cython_blas, sklearn.utils._heap, sklearn.utils._sorting, sklearn.metrics._pairwise_distances_reduction, sklearn.metrics._pairwise_fast, sklearn.neighbors._partition_nodes, sklearn.neighbors._ball_tree, sklearn.neighbors._kd_tree, sklearn.decomposition._cdnmf_fast, sklearn.utils._seq_dataset, sklearn.utils.arrayfuncs, sklearn.linear_model._cd_fast, sklearn.utils._weight_vector, sklearn.linear_model._sgd_fast, sklearn.linear_model._sag_fast, sklearn.svm._libsvm, sklearn.svm._liblinear, sklearn.svm._libsvm_sparse, sklearn.decomposition._online_lda_fast, sklearn._isotonic, sklearn.manifold._utils, sklearn.tree._utils, sklearn.tree._tree, sklearn.tree._splitter, sklearn.tree._criterion, sklearn.neighbors._quad_tree, sklearn.manifold._barnes_hut_tsne, sklearn.cluster._k_means_common, sklearn.cluster._k_means_minibatch, sklearn.cluster._k_means_lloyd, sklearn.cluster._k_means_elkan, sklearn.utils._fast_dict, sklearn.cluster._hierarchical_fast, sklearn.cluster._dbscan_inner, scipy.cluster._vq, scipy.cluster._hierarchy, scipy.cluster._optimal_leaf_ordering, sklearn.ensemble._gradient_boosting, sklearn.ensemble._hist_gradient_boosting.common, sklearn.ensemble._hist_gradient_boosting._gradient_boosting, sklearn.ensemble._hist_gradient_boosting._binning, sklearn.ensemble._hist_gradient_boosting._bitset, sklearn.ensemble._hist_gradient_boosting.splitting, sklearn.ensemble._hist_gradient_boosting.histogram, sklearn.ensemble._hist_gradient_boosting._predictor, sklearn.ensemble._hist_gradient_boosting.utils, scipy._lib._uarray._uarray, sklearn.svm._newrand (total: 170)
Segmentation fault autopkgtest [22:15:36]: test python3
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