Your message dated Fri, 30 Dec 2022 09:00:19 +0000
with message-id <e1pbbft-009ahe...@fasolo.debian.org>
and subject line Bug#1026330: fixed in sundials 6.4.1+dfsg1-2
has caused the Debian Bug report #1026330,
regarding sundials: autopkgtest regression: output on stderr
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1026330: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1026330
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: sundials
Version: 6.4.1+dfsg1-1
Severity: serious
User: debian...@lists.debian.org
Usertags: regression
Dear maintainer(s),
With a recent upload of sundials the autopkgtest of sundials fails in
testing when that autopkgtest is run with the binary packages of
sundials from unstable. It passes when run with only packages from
testing. In tabular form:
pass fail
sundials from testing 6.4.1+dfsg1-1
all others from testing from testing
I copied some of the output at the bottom of this report. The test of
you package itself passes, but it does print output on stderr. By
default, without the allow-stderr restriction, autopkgtest treats output
on stderr as failure.
Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=sundials
https://ci.debian.net/data/autopkgtest/testing/amd64/s/sundials/29469892/log.gz
../src/ark_heat2D.cpp: In function ‘int main(int, char**)’:
../src/ark_heat2D.cpp:276:40: warning: ‘int
SUNLinSolSetPrintLevel_PCG(SUNLinearSolver, int)’ is deprecated: Use
SUNLogger interface instead [-Wdeprecated-declarations]
276 | flag = SUNLinSolSetPrintLevel_PCG(LS, 1);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
In file included from ../src/ark_heat2D.cpp:58:
/usr/include/sunlinsol/sunlinsol_pcg.h:112:5: note: declared here
112 | int SUNLinSolSetPrintLevel_PCG(SUNLinearSolver LS, int
print_level);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
../src/ark_heat2D.cpp:279:38: warning: ‘int
SUNLinSolSetInfoFile_PCG(SUNLinearSolver, FILE*)’ is deprecated: Use
SUNLogger_SetInfoFilename instead [-Wdeprecated-declarations]
279 | flag = SUNLinSolSetInfoFile_PCG(LS, diagfp);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/sunlinsol/sunlinsol_pcg.h:109:5: note: declared here
109 | int SUNLinSolSetInfoFile_PCG(SUNLinearSolver LS,
| ^~~~~~~~~~~~~~~~~~~~~~~~
../src/ark_heat2D.cpp:290:42: warning: ‘int
SUNLinSolSetPrintLevel_SPGMR(SUNLinearSolver, int)’ is deprecated: Use
SUNLogger interface instead [-Wdeprecated-declarations]
290 | flag = SUNLinSolSetPrintLevel_SPGMR(LS, 1);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
In file included from ../src/ark_heat2D.cpp:59:
/usr/include/sunlinsol/sunlinsol_spgmr.h:128:5: note: declared here
128 | int SUNLinSolSetPrintLevel_SPGMR(SUNLinearSolver LS, int
print_level);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../src/ark_heat2D.cpp:293:40: warning: ‘int
SUNLinSolSetInfoFile_SPGMR(SUNLinearSolver, FILE*)’ is deprecated: Use
SUNLogger_SetInfoFilename instead [-Wdeprecated-declarations]
293 | flag = SUNLinSolSetInfoFile_SPGMR(LS, diagfp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/sunlinsol/sunlinsol_spgmr.h:125:5: note: declared here
125 | int SUNLinSolSetInfoFile_SPGMR(SUNLinearSolver LS,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
../src/ark_heat2D.cpp:397:33: warning: ‘int ARKStepSetDiagnostics(void*,
FILE*)’ is deprecated: use SUNDIALS_LOGGER instead
[-Wdeprecated-declarations]
397 | flag = ARKStepSetDiagnostics(arkode_mem, diagfp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from ../src/ark_heat2D.cpp:56:
/usr/include/arkode/arkode_arkstep.h:260:5: note: declared here
260 | int ARKStepSetDiagnostics(void *arkode_mem, FILE *diagfp);
| ^~~~~~~~~~~~~~~~~~~~~
build: OK
Analytical ODE test problem:
lamda = -100
reltol = 1e-06
abstol = 1e-10
t y0 y1 y2
--------------------------------------
0.0050 0.70328 0.70627 0.41005
0.0100 0.52267 0.52865 0.05232
0.0150 0.41249 0.42145 -0.16456
0.0200 0.34504 0.35697 -0.29600
0.0250 0.30350 0.31838 -0.37562
0.0300 0.27767 0.29551 -0.42382
0.0350 0.26138 0.28216 -0.45296
0.0400 0.25088 0.27460 -0.47053
0.0450 0.24389 0.27053 -0.48109
0.0500 0.23903 0.26858 -0.48740
--------------------------------------
Final Solver Statistics:
Internal solver steps = 67 (attempted = 69)
Total RHS evals: Fe = 0, Fi = 693
Total linear solver setups = 22
Total RHS evals for setting up the linear system = 0
Total number of Jacobian evaluations = 3
Total number of Newton iterations = 345
Total number of linear solver convergence failures = 0
Total number of error test failures = 2
run: demo1 OK
2D Heat PDE test problem:
--------------------------------- kx = 1
ky = 1
forcing = 1
tf = 1
xu = 1
yu = 1
nx = 32
ny = 32
dx = 0.0322581
dy = 0.0322581
--------------------------------- rtol = 1e-05
atol = 1e-10
order = 3
fixed h = 0
controller = 0
linear = 1
--------------------------------- linear solver = PCG
lin iters = 20
eps lin = 0
prec = 1
msbp = 0
--------------------------------- output = 1
---------------------------------
t ||u||_rms max error
-----------------------------------------------------------------------
0.000000000000000e+00 3.632812500000000e-01 0.000000000000000e+00
5.000000000000000e-02 3.551986506970737e-01 2.454708334354683e-03
1.000000000000000e-01 3.296221524496879e-01 2.894333980192343e-03
1.500000000000000e-01 2.894444182004682e-01 2.832987149069655e-03
2.000000000000000e-01 2.387098264599945e-01 2.521582136275402e-03
2.500000000000000e-01 1.824252212041233e-01 2.077346466104524e-03
3.000000000000000e-01 1.261157381228246e-01 1.577424243514536e-03
3.500000000000000e-01 7.529904383258686e-02 1.082876471873273e-03
4.000000000000000e-01 3.495155704793696e-02 6.467376069967667e-04
4.500000000000000e-01 9.023496207786188e-03 3.131517056738711e-04
4.999999999999999e-01 5.514768391619671e-05 1.155727387907813e-04
5.499999999999999e-01 8.918881720564088e-03 7.366564731561831e-05
6.000000000000000e-01 3.475273617053191e-02 1.914246851503348e-04
6.500000000000000e-01 7.502601774374533e-02 4.575552130483274e-04
7.000000000000001e-01 1.257965539449037e-01 8.461498813513435e-04
7.500000000000001e-01 1.820943737902987e-01 1.318651402538229e-03
8.000000000000002e-01 2.384088803800669e-01 1.829399134076426e-03
8.500000000000002e-01 2.892274058812140e-01 2.327831473091457e-03
9.000000000000002e-01 3.295756067639357e-01 2.765498882389861e-03
9.500000000000003e-01 3.555039042377847e-01 3.099574826796681e-03
1.000000000000000e+00 3.644741575642154e-01 3.296971618989897e-03
-----------------------------------------------------------------------
Final integrator statistics:
Steps = 197
Step attempts = 212
Error test fails = 15
RHS evals = 1487
NLS iters = 636
NLS fails = 0
LS iters = 12318
LS fails = 584
LS setups = 62
LS RHS evals = 12318
Jv products = 12318
Avg NLS iters per step attempt = 3.000000
Avg LS iters per NLS iter = 19.367925
Preconditioner setups = 17
Preconditioner solves = 12318
Max error = 3.296971618989897e-03
run: demo2 OK
autopkgtest [13:15:20]: test arkode
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: sundials
Source-Version: 6.4.1+dfsg1-2
Done: Anton Gladky <gl...@debian.org>
We believe that the bug you reported is fixed in the latest version of
sundials, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1026...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Anton Gladky <gl...@debian.org> (supplier of updated sundials package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 27 Dec 2022 23:21:00 +0100
Source: sundials
Binary: libsundials-arkode5 libsundials-arkode5-dbgsym libsundials-cvode6
libsundials-cvode6-dbgsym libsundials-cvodes6 libsundials-cvodes6-dbgsym
libsundials-dev libsundials-fortran-dev libsundials-ida6
libsundials-ida6-dbgsym libsundials-idas5 libsundials-idas5-dbgsym
libsundials-kinsol6 libsundials-kinsol6-dbgsym libsundials-nvecparallel-hypre6
libsundials-nvecparallel-hypre6-dbgsym libsundials-nvecparallel-mpi6
libsundials-nvecparallel-mpi6-dbgsym libsundials-nvecparallel-openmp6
libsundials-nvecparallel-openmp6-dbgsym libsundials-nvecparallel-petsc6
libsundials-nvecparallel-petsc6-dbgsym libsundials-nvecparallel-pthread6
libsundials-nvecparallel-pthread6-dbgsym libsundials-nvecserial6
libsundials-nvecserial6-dbgsym libsundials-sunlinsol3
libsundials-sunlinsol3-dbgsym libsundials-sunmatrix4
libsundials-sunmatrix4-dbgsym
Architecture: source amd64
Version: 6.4.1+dfsg1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Anton Gladky <gl...@debian.org>
Description:
libsundials-arkode5 - differential equation solver (SUNDIALS library)
libsundials-cvode6 - ordinary differential equation solver (SUNDIALS library)
libsundials-cvodes6 - ODE solver with sensistivity analysis (SUNDIALS library)
libsundials-dev - Package providing everything for SUNDIALS dev work
libsundials-fortran-dev - Package providing everything for SUNDIALS dev work.
Fortran files
libsundials-ida6 - differential-algebraic system solver (SUNDIALS library)
libsundials-idas5 - IDA solver with sensitivity capabilities (SUNDIALS library)
libsundials-kinsol6 - KINSOL solver (SUNDIALS library)
libsundials-nvecparallel-hypre6 - HYPRE vector operations library (SUNDIALS
library)
libsundials-nvecparallel-mpi6 - MPI vector operations library (SUNDIALS
library)
libsundials-nvecparallel-openmp6 - OpenMP vector operations library (SUNDIALS
library)
libsundials-nvecparallel-petsc6 - PETSc vector operations library (SUNDIALS
library)
libsundials-nvecparallel-pthread6 - Pthread vector operations library
(SUNDIALS library)
libsundials-nvecserial6 - Non-parallel vector operations library (SUNDIALS
library)
libsundials-sunlinsol3 - differential equation solver (SUNDIALS library)
libsundials-sunmatrix4 - differential equation solver (SUNDIALS library)
Closes: 1026330 1026352
Changes:
sundials (6.4.1+dfsg1-2) unstable; urgency=medium
.
* [cc5fc23] Rename libsundials-nvecparallel-mpi4 to ..-mpi6.
(Closes: #1026352)
* [4d03963] allow-stderr in autopkgtest. (Closes: #1026330)
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libsundials-sunlinsol3-dbgsym_6.4.1+dfsg1-2_amd64.deb
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libsundials-sunlinsol3_6.4.1+dfsg1-2_amd64.deb
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libsundials-sunmatrix4-dbgsym_6.4.1+dfsg1-2_amd64.deb
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libsundials-sunmatrix4_6.4.1+dfsg1-2_amd64.deb
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sundials_6.4.1+dfsg1-2_amd64.buildinfo
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