Source: gatk-native-bindings Version: 1.0.0-2.1 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20221220 ftbfs-bookworm
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_auto_build -- jar > mkdir -p .gradle/init.d > cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ > gradle --info --console plain --offline --stacktrace --no-daemon > --refresh-dependencies --gradle-user-home .gradle -Duser.home=. > -Duser.name=debian -Ddebian.package=gatk-native-bindings > -Dfile.encoding=UTF-8 --parallel --max-workers=8 jar > OpenJDK 64-Bit Server VM warning: Ignoring option --illegal-access=permit; > support was removed in 17.0 > Initialized native services in: /<<PKGBUILDDIR>>/.gradle/native > To honour the JVM settings for this build a new JVM will be forked. Please > consider using the daemon: > https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. > Starting process 'Gradle build daemon'. Working directory: > /<<PKGBUILDDIR>>/.gradle/daemon/4.4.1 Command: > /usr/lib/jvm/java-17-openjdk-amd64/bin/java > -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar > -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp > /usr/share/gradle/lib/gradle-launcher-4.4.1.jar > org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 > Successfully started process 'Gradle build daemon' > An attempt to start the daemon took 1.208 secs. > The client will now receive all logging from the daemon (pid: 1153077). The > daemon log file: /<<PKGBUILDDIR>>/.gradle/daemon/4.4.1/daemon-1153077.out.log > Daemon will be stopped at the end of the build stopping after processing > Closing daemon's stdin at end of input. > The daemon will no longer process any standard input. > Using 8 worker leases. > Creating new cache for fileHashes, path > /<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access > org.gradle.cache.internal.DefaultCacheAccess@1ec3cd8a > Creating new cache for resourceHashesCache, path > /<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, > access org.gradle.cache.internal.DefaultCacheAccess@1ec3cd8a > Creating new cache for fileHashes, path > /<<PKGBUILDDIR>>/.gradle/4.4.1/fileHashes/fileHashes.bin, access > org.gradle.cache.internal.DefaultCacheAccess@27eb4497 > > FAILURE: Build failed with an exception. > > * What went wrong: > Could not create service of type ScriptPluginFactory using > BuildScopeServices.createScriptPluginFactory(). > > Could not create service of type PluginResolutionStrategyInternal using > > BuildScopeServices.createPluginResolutionStrategy(). > > * Try: > Run with --debug option to get more log output. Run with --scan to get full > insights. > > * Exception is: > org.gradle.internal.service.ServiceCreationException: Could not create > service of type ScriptPluginFactory using > BuildScopeServices.createScriptPluginFactory(). > at > org.gradle.internal.service.DefaultServiceRegistry$FactoryMethodService.invokeMethod(DefaultServiceRegistry.java:797) > at > org.gradle.internal.service.DefaultServiceRegistry$FactoryService.create(DefaultServiceRegistry.java:748) > at > org.gradle.internal.service.DefaultServiceRegistry$ManagedObjectProvider.getInstance(DefaultServiceRegistry.java:574) > at > org.gradle.internal.service.DefaultServiceRegistry$SingletonService.get(DefaultServiceRegistry.java:623) > at > org.gradle.internal.service.DefaultServiceRegistry$FactoryService.assembleParameters(DefaultServiceRegistry.java:761) > at > org.gradle.internal.service.DefaultServiceRegistry$FactoryService.create(DefaultServiceRegistry.java:747) > at > org.gradle.internal.service.DefaultServiceRegistry$ManagedObjectProvider.getInstance(DefaultServiceRegistry.java:574) > at > org.gradle.internal.service.DefaultServiceRegistry$SingletonService.get(DefaultServiceRegistry.java:623) > at > org.gradle.internal.service.DefaultServiceRegistry$FactoryService.assembleParameters(DefaultServiceRegistry.java:761) > at > org.gradle.internal.service.DefaultServiceRegistry$FactoryService.create(DefaultServiceRegistry.java:747) > at > org.gradle.internal.service.DefaultServiceRegistry$ManagedObjectProvider.getInstance(DefaultServiceRegistry.java:574) > at > org.gradle.internal.service.DefaultServiceRegistry$SingletonService.get(DefaultServiceRegistry.java:623) > at > org.gradle.internal.service.DefaultServiceRegistry.doGet(DefaultServiceRegistry.java:344) > at > org.gradle.internal.service.DefaultServiceRegistry.get(DefaultServiceRegistry.java:325) > at > org.gradle.initialization.DefaultGradleLauncherFactory.doNewInstance(DefaultGradleLauncherFactory.java:174) > at > org.gradle.initialization.DefaultGradleLauncherFactory.newInstance(DefaultGradleLauncherFactory.java:106) > at > org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:40) > at > org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:30) > at > org.gradle.launcher.exec.BuildTreeScopeBuildActionExecuter.execute(BuildTreeScopeBuildActionExecuter.java:39) > at > org.gradle.launcher.exec.BuildTreeScopeBuildActionExecuter.execute(BuildTreeScopeBuildActionExecuter.java:25) > at > org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:80) > at > org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:53) > at > org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:57) > at > org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:32) > at > org.gradle.tooling.internal.provider.GradleThreadBuildActionExecuter.execute(GradleThreadBuildActionExecuter.java:36) > at > org.gradle.tooling.internal.provider.GradleThreadBuildActionExecuter.execute(GradleThreadBuildActionExecuter.java:25) > at > org.gradle.tooling.internal.provider.ParallelismConfigurationBuildActionExecuter.execute(ParallelismConfigurationBuildActionExecuter.java:43) > at > org.gradle.tooling.internal.provider.ParallelismConfigurationBuildActionExecuter.execute(ParallelismConfigurationBuildActionExecuter.java:29) > at > org.gradle.tooling.internal.provider.StartParamsValidatingActionExecuter.execute(StartParamsValidatingActionExecuter.java:69) > at > org.gradle.tooling.internal.provider.StartParamsValidatingActionExecuter.execute(StartParamsValidatingActionExecuter.java:30) > at > org.gradle.tooling.internal.provider.SessionFailureReportingActionExecuter.execute(SessionFailureReportingActionExecuter.java:59) > at > org.gradle.tooling.internal.provider.SessionFailureReportingActionExecuter.execute(SessionFailureReportingActionExecuter.java:44) > at > org.gradle.tooling.internal.provider.SetupLoggingActionExecuter.execute(SetupLoggingActionExecuter.java:45) > at > org.gradle.tooling.internal.provider.SetupLoggingActionExecuter.execute(SetupLoggingActionExecuter.java:30) > at > org.gradle.launcher.daemon.server.exec.ExecuteBuild.doBuild(ExecuteBuild.java:67) > at > org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36) > at > org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122) > at > org.gradle.launcher.daemon.server.exec.WatchForDisconnection.execute(WatchForDisconnection.java:37) > at > org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122) > at > org.gradle.launcher.daemon.server.exec.ResetDeprecationLogger.execute(ResetDeprecationLogger.java:26) > at > org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122) > at > org.gradle.launcher.daemon.server.exec.RequestStopIfSingleUsedDaemon.execute(RequestStopIfSingleUsedDaemon.java:34) > at > org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122) > at > org.gradle.launcher.daemon.server.exec.ForwardClientInput$2.call(ForwardClientInput.java:74) > at > org.gradle.launcher.daemon.server.exec.ForwardClientInput$2.call(ForwardClientInput.java:72) > at org.gradle.util.Swapper.swap(Swapper.java:38) > at > org.gradle.launcher.daemon.server.exec.ForwardClientInput.execute(ForwardClientInput.java:72) > at > org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122) > at > org.gradle.launcher.daemon.server.exec.LogAndCheckHealth.execute(LogAndCheckHealth.java:50) > at > org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122) > at > org.gradle.launcher.daemon.server.exec.LogToClient.doBuild(LogToClient.java:62) > at > org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36) > at > org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122) > at > org.gradle.launcher.daemon.server.exec.EstablishBuildEnvironment.doBuild(EstablishBuildEnvironment.java:82) > at > org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36) > at > org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122) > at > org.gradle.launcher.daemon.server.exec.StartBuildOrRespondWithBusy$1.run(StartBuildOrRespondWithBusy.java:50) > at > org.gradle.launcher.daemon.server.DaemonStateCoordinator$1.run(DaemonStateCoordinator.java:295) > at > org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63) > at > org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46) > at > org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) > Caused by: org.gradle.internal.service.ServiceCreationException: Could not > create service of type PluginResolutionStrategyInternal using > BuildScopeServices.createPluginResolutionStrategy(). > at > org.gradle.internal.service.DefaultServiceRegistry$FactoryMethodService.invokeMethod(DefaultServiceRegistry.java:797) > at > org.gradle.internal.service.DefaultServiceRegistry$FactoryService.create(DefaultServiceRegistry.java:748) > at > org.gradle.internal.service.DefaultServiceRegistry$ManagedObjectProvider.getInstance(DefaultServiceRegistry.java:574) > at > org.gradle.internal.service.DefaultServiceRegistry$SingletonService.get(DefaultServiceRegistry.java:623) > at > org.gradle.internal.service.DefaultServiceRegistry$FactoryService.assembleParameters(DefaultServiceRegistry.java:761) > at > org.gradle.internal.service.DefaultServiceRegistry$FactoryService.create(DefaultServiceRegistry.java:747) > at > org.gradle.internal.service.DefaultServiceRegistry$ManagedObjectProvider.getInstance(DefaultServiceRegistry.java:574) > at > org.gradle.internal.service.DefaultServiceRegistry$SingletonService.get(DefaultServiceRegistry.java:623) > at > org.gradle.internal.service.DefaultServiceRegistry.doGet(DefaultServiceRegistry.java:344) > at > org.gradle.internal.service.DefaultServiceRegistry.get(DefaultServiceRegistry.java:325) > at > org.gradle.internal.service.scopes.BuildScopeServices.defaultScriptPluginFactory(BuildScopeServices.java:300) > at > org.gradle.internal.service.scopes.BuildScopeServices.createScriptPluginFactory(BuildScopeServices.java:287) > at > java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) > at > java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73) > at > org.gradle.internal.service.ReflectionBasedServiceMethod.invoke(ReflectionBasedServiceMethod.java:35) > at > org.gradle.internal.service.DefaultServiceRegistry$FactoryMethodService.invokeMethod(DefaultServiceRegistry.java:795) > ... 60 more > Caused by: org.gradle.api.GradleException: Could not generate a proxy class > for class > org.gradle.plugin.management.internal.DefaultPluginResolutionStrategy. > at > org.gradle.api.internal.AbstractClassGenerator.generateUnderLock(AbstractClassGenerator.java:223) > at > org.gradle.api.internal.AbstractClassGenerator.generate(AbstractClassGenerator.java:79) > at > org.gradle.api.internal.ClassGeneratorBackedInstantiator.newInstance(ClassGeneratorBackedInstantiator.java:36) > at > org.gradle.plugin.internal.PluginUsePluginServiceRegistry$BuildScopeServices.createPluginResolutionStrategy(PluginUsePluginServiceRegistry.java:113) > at > java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) > at > java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73) > at > org.gradle.internal.service.ReflectionBasedServiceMethod.invoke(ReflectionBasedServiceMethod.java:35) > at > org.gradle.internal.service.DefaultServiceRegistry$FactoryMethodService.invokeMethod(DefaultServiceRegistry.java:795) > ... 77 more > Caused by: org.gradle.internal.UncheckedException: > java.lang.IllegalAccessException: module java.base does not open java.lang to > unnamed module @47faa49c > at > org.gradle.internal.UncheckedException.throwAsUncheckedException(UncheckedException.java:63) > at > org.gradle.internal.UncheckedException.throwAsUncheckedException(UncheckedException.java:40) > at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:76) > at > org.gradle.internal.classloader.ClassLoaderUtils$LookupClassDefiner.defineClass(ClassLoaderUtils.java:142) > at > org.gradle.internal.classloader.ClassLoaderUtils.define(ClassLoaderUtils.java:92) > at > org.gradle.model.internal.asm.AsmClassGenerator.define(AsmClassGenerator.java:58) > at > org.gradle.model.internal.asm.AsmClassGenerator.define(AsmClassGenerator.java:54) > at > org.gradle.api.internal.AsmBackedClassGenerator$ClassBuilderImpl.generate(AsmBackedClassGenerator.java:967) > at > org.gradle.api.internal.AbstractClassGenerator.generateUnderLock(AbstractClassGenerator.java:221) > ... 86 more > Caused by: java.lang.IllegalAccessException: module java.base does not open > java.lang to unnamed module @47faa49c > at > java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) > at > java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73) > ... 92 more > > > * Get more help at https://help.gradle.org > > BUILD FAILED in 2s > dh_auto_build: error: gradle --info --console plain --offline --stacktrace > --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. > -Duser.name=debian -Ddebian.package=gatk-native-bindings > -Dfile.encoding=UTF-8 --parallel --max-workers=8 jar returned exit code 1 > make[1]: *** [debian/rules:13: override_dh_auto_build] Error 25 The full build log is available from: http://qa-logs.debian.net/2022/12/20/gatk-native-bindings_1.0.0-2.1_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20221220;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20221220&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
