Source: python-pysam Version: 0.19.1+ds-1 Severity: serious Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.11
Hi Maintainer python-pysam FTBFS during the recent rebuild adding Python 3.11 as a supported version [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://buildd.debian.org/status/package.php?p=python-pysam tests/AlignmentFilePileup_test.py::TestPileupObjects::testIteratorOutOfScope Fatal Python error: Segmentation fault Current thread 0x00007f7e0ad1d040 (most recent call first): File "/usr/lib/python3.11/unittest/case.py", line 237 in handle File "/usr/lib/python3.11/unittest/case.py", line 766 in assertRaises File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pysam/build/tests/AlignmentFilePileup_test.py", line 220 in testIteratorOutOfScope File "/usr/lib/python3.11/unittest/case.py", line 579 in _callTestMethod File "/usr/lib/python3.11/unittest/case.py", line 623 in run File "/usr/lib/python3.11/unittest/case.py", line 678 in __call__ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 327 in runtest File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 166 in pytest_runtest_call File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in __call__ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 259 in <lambda> File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 338 in from_call File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 258 in call_runtest_hook File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 219 in call_and_report File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 130 in runtestprotocol File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 111 in pytest_runtest_protocol File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in __call__ File "/usr/lib/python3/dist-packages/_pytest/main.py", line 347 in pytest_runtestloop File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in __call__ File "/usr/lib/python3/dist-packages/_pytest/main.py", line 322 in _main File "/usr/lib/python3/dist-packages/_pytest/main.py", line 268 in wrap_session File "/usr/lib/python3/dist-packages/_pytest/main.py", line 315 in pytest_cmdline_main File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in __call__ File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 164 in main File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 187 in console_main File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 5 in <module> File "<frozen runpy>", line 88 in _run_code File "<frozen runpy>", line 198 in _run_module_as_main Extension modules: pysam.libcutils, pysam.libchtslib, pysam.libcsamtools, pysam.libcbcftools, pysam.libcfaidx, pysam.libctabixproxies, pysam.libctabix, pysam.libcalignmentfile, pysam.libcalignedsegment, pysam.libcsamfile, pysam.libcvcf, pysam.libcbcf, pysam.libcbgzf, Cython.Plex.Actions, Cython.Plex.Scanners, Cython.Compiler.Scanning, Cython.Tempita._tempita, Cython.Compiler.Visitor, Cython.Compiler.FlowControl, _compile_test (total: 20) Segmentation fault E: pybuild pybuild:379: test: plugin distutils failed with: exit code=139: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pysam/build; python3.11 -m pytest tests
