Your message dated Mon, 14 Nov 2022 13:21:35 +0000 with message-id <e1ouzp5-00aqgz...@fasolo.debian.org> and subject line Bug#1024063: fixed in python-pyvcf 0.6.8+git20170215.476169c-9 has caused the Debian Bug report #1024063, regarding python-pyvcf FTBFS with Python 3.11 as supported version to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1024063: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1024063 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-pyvcf Version: 0.6.8+git20170215.476169c-8 Severity: serious Tags: ftbfs https://buildd.debian.org/status/logs.php?pkg=python-pyvcf&ver=0.6.8%2Bgit20170215.476169c-8%2Bb3 ... =================================== FAILURES =================================== ___________________________ Test1kgSites.test_writer ___________________________ self = <vcf.test.test_vcf.Test1kgSites testMethod=test_writer> def test_writer(self): """FORMAT should not be written if not present in the template and no extra tab character should be printed if there are no FORMAT fields.""" reader = vcf.Reader(fh('1kg.sites.vcf', 'r')) out = StringIO() > writer = vcf.Writer(out, reader, lineterminator='\n') vcf/test/test_vcf.py:298: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <vcf.parser.Writer object at 0x7ff217f72990> stream = <_io.StringIO object at 0x7ff21801f5b0> template = <vcf.parser.Reader object at 0x7ff217f721d0>, lineterminator = '\n' def __init__(self, stream, template, lineterminator="\n"): > self.writer = csv.writer(stream, delimiter="\t", lineterminator=lineterminator, quotechar='', quoting=csv.QUOTE_NONE) E TypeError: "quotechar" must be a 1-character string vcf/parser.py:647: TypeError __________________________ TestInfoOrder.test_writer ___________________________ self = <vcf.test.test_vcf.TestInfoOrder testMethod=test_writer> def test_writer(self): """ Order of INFO fields should be compatible with the order of their definition in the header and undefined fields should be last and in alphabetical order. """ reader = vcf.Reader(fh('1kg.sites.vcf', 'r')) out = StringIO() > writer = vcf.Writer(out, reader, lineterminator='\n') vcf/test/test_vcf.py:354: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ... =========================== short test summary info ============================ FAILED vcf/test/test_vcf.py::Test1kgSites::test_writer - TypeError: "quotecha... FAILED vcf/test/test_vcf.py::TestInfoOrder::test_writer - TypeError: "quotech... FAILED vcf/test/test_vcf.py::TestInfoTypeCharacter::test_write - TypeError: "... FAILED vcf/test/test_vcf.py::TestParseMetaLine::test_write - TypeError: "quot... FAILED vcf/test/test_vcf.py::TestGatkOutputWriter::testWrite - TypeError: "qu... FAILED vcf/test/test_vcf.py::TestBcfToolsOutputWriter::testWrite - TypeError:... FAILED vcf/test/test_vcf.py::TestWriterDictionaryMeta::testWrite - TypeError:... FAILED vcf/test/test_vcf.py::TestSampleFilter::testSampleFilterModule - TypeE... FAILED vcf/test/test_vcf.py::TestRegression::test_null_mono - TypeError: "quo... FAILED vcf/test/test_vcf.py::TestUncalledGenotypes::test_write_uncalled - Typ... ============ 10 failed, 83 passed, 11 skipped, 2 warnings in 3.07s ============= E: pybuild pybuild:379: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_vcf/build; python3.11 -m pytest
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--- Begin Message ---Source: python-pyvcf Source-Version: 0.6.8+git20170215.476169c-9 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of python-pyvcf, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1024...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated python-pyvcf package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 14 Nov 2022 14:00:33 +0100 Source: python-pyvcf Architecture: source Version: 0.6.8+git20170215.476169c-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 1024063 Changes: python-pyvcf (0.6.8+git20170215.476169c-9) unstable; urgency=medium . * Packaging update * Standards-Version: 4.6.1 (routine-update) * Fix 'TypeError: "quotechar" must be a 1-character string' Closes: #1024063 Checksums-Sha1: b85e14a275f0af64f475d2487a8f3e624a566b40 2436 python-pyvcf_0.6.8+git20170215.476169c-9.dsc fd3e2a41805a5b0b388d7bdd46c252434d6429ab 10180 python-pyvcf_0.6.8+git20170215.476169c-9.debian.tar.xz 6270bc86b4a0493d156757745cccf35414235e88 9348 python-pyvcf_0.6.8+git20170215.476169c-9_amd64.buildinfo Checksums-Sha256: be90eefc7bcde144e006aa5b2f49307b1bd358ae84d0cb7e9e1a3b5b9fb2bd65 2436 python-pyvcf_0.6.8+git20170215.476169c-9.dsc 80c1429e5e670c474ec57f966a38071ec6442a72d155ccbc7252b459ee068588 10180 python-pyvcf_0.6.8+git20170215.476169c-9.debian.tar.xz 0edecf30d4b8c21a67175c2c15db90cc5aacfe3061f16eaab9b1a6439accbad7 9348 python-pyvcf_0.6.8+git20170215.476169c-9_amd64.buildinfo Files: 406fa7fc271f7e06c78110d715c8d512 2436 python optional python-pyvcf_0.6.8+git20170215.476169c-9.dsc 11966aa2d8f994232d1d62fde839d151 10180 python optional python-pyvcf_0.6.8+git20170215.476169c-9.debian.tar.xz ad05967552d9e3a3dc7d73eba086ffab 9348 python optional python-pyvcf_0.6.8+git20170215.476169c-9_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmNyPKgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE4Wg//bEYd592X9Ddn+6Tz6RImMSODBdIIk6x3 RyU+8K+x1xi6ULCISIrQgvZqp8Mqg6KIcfVk0tehSyk5XbbyL2/PgfN7k9h4T6l/ Yuy00onIxyaswWMkRI/NGyM12I7bhcF1kTiGjCUvT1lCjSOqYZudD2xyEtHxLkpE zlYXyTkdaxEXhiHTjS6RotQTjoG2108nCnXOvP9n2TyosezMO2YpcBCw1daWVoC5 HV0n/fbQP0nTfjgqs48c1PPMVpQZUUC0EKhdWEAMib0xf7Uz12ITlhWdSqiU3NwZ dbiyL9Y9rTvus7xUUKzja9mbZ2AOOSdn+q9iNW8K7nlZXt0uLwplqwl5iSZjbnqR xHoIKrigdnWCTk+3KPxBddDxAI1/qshRD0wC9OXYYphRYscJix9/SWwQw/njdUQ8 K9LlG5uDvdY+ah5bASkKBKsCof2VewVJViW7WRk4OynZ/PjWCvy+e7hTQ4+xigqV FyCNrSRYg8dOdjeJKQtS6yU5vORpGdDZwPg+JEboZ9QfUsc1eEV3dyqjKyUQmFBT UswAZS9hE57QtAt1xKT8e/Ec7KVjL4mCnaEWBnboaUs9CPkJ0aLpAx4OCmIKVwq5 fVAyurt0Ce5rYYay1fFm8ASMeXYJIWp9N6n5+PQg+79KbE3+uTrFBYJnunBxxMJa am1AxiAWM40= =ctPu -----END PGP SIGNATURE-----
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