Your message dated Tue, 25 Oct 2022 17:06:40 +0000
with message-id <e1onnnw-00a5ux...@fasolo.debian.org>
and subject line Bug#1019478: fixed in libflame 5.2.0-4
has caused the Debian Bug report #1019478,
regarding scipy breaks libflame autopkgtest on i386: Floating point exception
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1019478: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1019478
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: scipy, libflame
Control: found -1 scipy/1.8.1-9
Control: found -1 libflame/5.2.0-3
Severity: serious
Tags: sid bookworm
User: debian...@lists.debian.org
Usertags: breaks needs-update
Dear maintainer(s),
With a recent upload of scipy (1.8.1-9, 1.8.1-7 passed) the autopkgtest
of libflame fails in testing when that autopkgtest is run with the
binary packages of scipy from unstable. It passes when run with only
packages from testing. In tabular form:
pass fail
scipy from testing 1.8.1-9 and later
libflame from testing 5.2.0-3
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is *not* blocking the migration of scipy to
testing [1] (because of bug #1019525). Due to the nature of this issue,
I filed this bug report against both packages. Can you please
investigate the situation and reassign the bug to the right package?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=scipy
https://ci.debian.net/data/autopkgtest/testing/i386/libf/libflame/25855917/log.gz
(Please be aware of:
WARNING: log file truncated at 20 MB (before compression)
First 1MB is presented above, last 19 MB below
)
special/tests/test_kolmogorov.py::TestSmirnovi::test_x_equals_0 <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovi::test_x_equals_1 <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovi::test_n_equals_1 <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovi::test_n_equals_2 <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovi::test_n_equals_3 <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovi::test_round_trip <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovi::test_x_equals_0point5 <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovp::test_nan <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovp::test_basic <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
PASSED [ 83%]
special/tests/test_kolmogorov.py::TestSmirnovp::test_oneminusoneovern <-
../../../../../usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py
Fatal Python error: Floating point exception
Current thread 0xf7ba5700 (most recent call first):
File "/usr/lib/python3/dist-packages/scipy/special/_testutils.py",
line 213 in eval_func_at_params
File "/usr/lib/python3/dist-packages/scipy/special/_testutils.py",
line 227 in check
File
"/usr/lib/python3/dist-packages/scipy/special/tests/test_kolmogorov.py",
line 213 in test_oneminusoneovern
File "/usr/lib/python3/dist-packages/_pytest/python.py", line 192 in
pytest_pyfunc_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1761 in
runtest
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 166 in
pytest_runtest_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 259 in
<lambda>
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 338 in
from_call
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 258 in
call_runtest_hook
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 219 in
call_and_report
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 130 in
runtestprotocol
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 111 in
pytest_runtest_protocol
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 347 in
pytest_runtestloop
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 322 in _main
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 268 in
wrap_session
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 315 in
pytest_cmdline_main
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py",
line 164 in main
File "/usr/lib/python3/dist-packages/scipy/_lib/_testutils.py", line
69 in __call__
File "<string>", line 1 in <module>
Extension modules: numpy.core._multiarray_umath,
numpy.core._multiarray_tests, numpy.linalg.lapack_lite,
numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal,
numpy.random._common, numpy.random.bit_generator,
numpy.random._bounded_integers, numpy.random._mt19937,
numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64,
numpy.random._sfc64, numpy.random._generator, scipy._lib._ccallback_c,
scipy._lib._fpumode, scipy._lib._test_ccallback,
scipy.sparse._sparsetools, scipy.sparse._csparsetools,
scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path,
scipy.sparse.csgraph._traversal,
scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow,
scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering,
scipy.spatial._ckdtree, scipy._lib.messagestream, scipy.spatial._qhull,
scipy.spatial._voronoi, scipy.linalg._fblas, scipy.linalg._flapack,
scipy.linalg._cythonized_array_utils, scipy.linalg._flinalg,
scipy.linalg._solve_toeplitz, scipy.linalg._matfuncs_sqrtm_triu,
scipy.linalg.cython_blas, scipy.linalg.cython_lapack,
scipy.linalg._decomp_update, scipy.spatial._distance_wrap,
scipy.spatial._hausdorff, scipy.special._ufuncs_cxx,
scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb,
scipy.special._ellip_harm_2, scipy.spatial.transform._rotation,
scipy.cluster._vq, scipy.cluster._hierarchy,
scipy.cluster._optimal_leaf_ordering, scipy._lib._uarray._uarray,
scipy.fftpack.convolve, scipy.sparse.linalg._isolve._iterative,
scipy.sparse.linalg._dsolve._superlu,
scipy.sparse.linalg._eigen.arpack._arpack, scipy.optimize._minpack2,
scipy.optimize._group_columns, scipy.optimize._trlib._trlib,
scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC,
scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack,
scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros,
scipy.optimize.__nnls, scipy.optimize._highs.cython.src._highs_wrapper,
scipy.optimize._highs._highs_wrapper,
scipy.optimize._highs.cython.src._highs_constants,
scipy.optimize._highs._highs_constants, scipy.linalg._interpolative,
scipy.optimize._bglu_dense, scipy.optimize._lsap_module,
scipy.integrate._odepack, scipy.integrate._quadpack,
scipy.integrate._vode, scipy.integrate._dop, scipy.integrate._lsoda,
scipy.integrate._test_odeint_banded, scipy.interpolate._fitpack,
scipy.interpolate.dfitpack, scipy.interpolate._bspl,
scipy.interpolate._ppoly, scipy.interpolate.interpnd,
scipy.interpolate._rbfinterp_pythran, scipy.ndimage._nd_image,
_ni_label, scipy.ndimage._ni_label, scipy.special.cython_special,
scipy.stats._stats, beta_ufunc, scipy.stats._boost.beta_ufunc,
binom_ufunc, scipy.stats._boost.binom_ufunc, nbinom_ufunc,
scipy.stats._boost.nbinom_ufunc, hypergeom_ufunc,
scipy.stats._boost.hypergeom_ufunc, scipy.stats._biasedurn,
scipy.stats._hypotests_pythran, scipy.stats._statlib, scipy.stats._mvn,
scipy.stats._sobol, scipy.stats._qmc_cy,
scipy.stats._unuran.unuran_wrapper, scipy.io.matlab._mio_utils,
scipy.io.matlab._streams, scipy.io.matlab._mio5_utils,
scipy.io._test_fortran, scipy.ndimage._ctest, _cytest,
scipy.ndimage._cytest, scipy.odr.__odrpack,
scipy.optimize.cython_optimize._zeros, scipy.signal._sigtools,
scipy.signal._max_len_seq_inner, scipy.signal._upfirdn_apply,
scipy.signal._spline, scipy.signal._sosfilt, scipy.signal._spectral,
scipy.signal._peak_finding_utils,
scipy.sparse.linalg._propack._spropack,
scipy.sparse.linalg._propack._dpropack,
scipy.sparse.linalg._propack._cpropack,
scipy.sparse.linalg._propack._zpropack, scipy.special._test_round,
scipy._lib._test_deprecation_def, scipy._lib._test_deprecation_call
(total: 129)
bash: line 1: 3834 Floating point exceptionbash -ec 'python3 -c "import
scipy as sp; sp.test('\''full'\'', verbose=3)"' 2> >(tee -a
/tmp/autopkgtest-lxc.v3379ep8/downtmp/scipy-with-libflame-stderr 1>&2) >
>(tee -a /tmp/autopkgtest-lxc.v3379ep8/downtmp/scipy-with-libflame-stdout)
autopkgtest [05:57:29]: test scipy-with-libflame: -----------------------]
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: libflame
Source-Version: 5.2.0-4
Done: Mo Zhou <lu...@debian.org>
We believe that the bug you reported is fixed in the latest version of
libflame, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1019...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Mo Zhou <lu...@debian.org> (supplier of updated libflame package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 25 Oct 2022 12:39:03 -0400
Source: libflame
Architecture: source
Version: 5.2.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Mo Zhou <lu...@debian.org>
Closes: 1018074 1019478 1019525
Changes:
libflame (5.2.0-4) unstable; urgency=medium
.
* rules: fix the logic for dh_auto_test.
* Disable autopkgtest with numpy, scipy, and octave. They are not yet
compiled against libflame. (Closes: #1019525, #1019478, #1018074)
Checksums-Sha1:
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4e9a90e57051221d01aee6ea4959211c0836b598 23920 libflame_5.2.0-4.debian.tar.xz
8fb41c548ec6d711c622da1fd19651cb8064cc46 6448 libflame_5.2.0-4_source.buildinfo
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Files:
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4281a015f3ef23294ca882e5fc5312b5 23920 math optional
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