Your message dated Sat, 22 Oct 2022 12:35:28 +0000 with message-id <e1omdiq-00f7q8...@fasolo.debian.org> and subject line Bug#1021995: fixed in fastqtl 2.184+v7+dfsg-3 has caused the Debian Bug report #1021995, regarding fastqtl: autopkgtest regression to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1021995: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1021995 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: fastqtl Version: 2.184+v7+dfsg-2 Severity: serious https://ci.debian.net/data/autopkgtest/testing/amd64/f/fastqtl/27230464/log.gz ... autopkgtest [23:13:45]: test run-sample-analysis: [----------------------- covariates.txt.gz genotypes.vcf.gz genotypes.vcf.gz.tbi interaction.txt phenotypes.bed.gz phenotypes.bed.gz.tbi [33mF[0mast [33mQTL[0m * Authors : Olivier DELANEAU, Halit ONGEN, Alfonso BUIL & Manolis DERMITZAKIS * Contact : olivier.delan...@gmail.com * Webpage : http://fastqtl.sourceforge.net/ * Version : v2.184_gtex Perform permutation based interaction analysis (used to calculate corrected p-values for MPs) * Perform 100 permutations * Test interaction with term from [interaction.txt] * Random number generator is seeded with 1 * Considering variants within 1e+06 bp of the MPs * Using minor allele frequency threshold = 0.0000 * Using minor allele sample threshold = 0 * Using INFO field AF threshold = 0.0000 * Chunk processed 1 / 100 Scanning phenotype data in [phenotypes.bed.gz] * 364 phenotypes Reading phenotype data in [phenotypes.bed.gz] * region = 22:17517460-17646177 * 373 samples included * 4 phenotypes included Reading genotype data in [genotypes.vcf.gz] in VCF format * region = 22:16517460-18646177 * 373 samples included * 8580 sites included Reading covariates in [covariates.txt.gz] * 373 samples included * 4 covariate(s) included Reading interaction term in [interaction.txt] * 373 samples included Imputing missing genotypes Imputing missing phenotypes Initialize covariate Processing gene [ENSG00000237438.1] * Number of variants in cis = 7966 * Beta distribution parameters = 1.0382 2287.7101 * Progress = 25.0% Processing gene [ENSG00000177663.8] * Number of variants in cis = 8165 * Beta distribution parameters = 0.7994 2826.0721 * Progress = 50.0% Processing gene [ENSG00000183307.3] * Number of variants in cis = 8279 * Beta distribution parameters = 0.9595 9906.5566 * Progress = 75.0% Processing gene [ENSG00000069998.8] * Number of variants in cis = 8466 * Beta distribution parameters = 0.9606 4564.2130 * Progress = 100.0% Running time: 37 seconds 5d4 < ENSG00000093072.10 8531 1.06453 1772.43 334.203 snp_22_17738177 -948 0.000356058 0.683168 0.649116 autopkgtest [23:14:22]: test run-sample-analysis: -----------------------] autopkgtest [23:14:22]: test run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - run-sample-analysis FAIL non-zero exit status 1 Likely the files under debian/tests/output_tests/ must be regenerated.
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--- Begin Message ---Source: fastqtl Source-Version: 2.184+v7+dfsg-3 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of fastqtl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1021...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated fastqtl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sat, 22 Oct 2022 13:50:04 +0200 Source: fastqtl Architecture: source Version: 2.184+v7+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 1021994 1021995 Changes: fastqtl (2.184+v7+dfsg-3) unstable; urgency=medium . * Team upload. * d/rules: only fix permissions for arch-any builds. (Closes: #1021994) * d/t/fastqtl_expected_output.txt: update to match behavior of v7. (Closes: #1021995) Checksums-Sha1: c4098c3fa8f50dceed8472f68032c43ddbce526e 2366 fastqtl_2.184+v7+dfsg-3.dsc b4f04e334d20302ee310bce9402ec9500d257227 20796 fastqtl_2.184+v7+dfsg-3.debian.tar.xz Checksums-Sha256: 7542ceb3ef5dda6d4ce419df90d067c6d7ad56f9d4dc52a6b508a9f0afaaae9b 2366 fastqtl_2.184+v7+dfsg-3.dsc b364ceb5f6b352e8c908475f9ae671622e542be42bee2fdaee0bd96d1cb66582 20796 fastqtl_2.184+v7+dfsg-3.debian.tar.xz Files: 998ea471818c60ceced84e19c53de755 2366 science optional fastqtl_2.184+v7+dfsg-3.dsc eea9107515f36d9e41ff982111c1d472 20796 science optional fastqtl_2.184+v7+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmNT2+gUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqi9A//RZLDI7hsM6H3r+zjFCYV/ydgYwRl KnCrtddU+ElqQ/MxHKnrmF8VIQmERZJ/5RMQQGtX7J78nmsCm+P7daDzhtFSRdTR mSvZcj+NRLulHgDHOgRVtZo6vQKDGryEGIiY2mCzzyXdVBDK7/0NNgelWJhQ7bS3 KGgwua7+bYgdwQ+LQK5wVxTHXepac6JiDiaHSqM7ml641BCLicxoKXlF1MscqcD6 K3pln4E8MtF7ffvU+GLdJ2Pxi+vbIWTiJjbTosPQnC/ALoNXdTcESzqv4Gs8Hwwb Dn/2T/pJnF/syL2etTIRyIdAGF/4cV58ngXGC+ZbREsV13XikTg9wksv1IpCNeIa WV9E11InS9/S6ffQ884xVoOT29UKsDdUc9HydFymflSqJmdewtuSvuPMppSHD6rY tV7YCnC0JIF6bALvhrSd2PAfzkExuqQFdJFGWj74FVlsid3KMJZhgXcmQgWMRA8U 1VQnmz6D3wQSNd4Khk+FrjluPnFUvnnaHUWqq13MNo+vF0Kb/pI3WxdvH7shwOU+ t1ndTTbP3fbaUS175sRAIxxfH2pzPeUWIIzaBXnXarSo3pZZ0umjeA5HNXU6bvlF vRG/nN9p/qch6WGUsFbti0GXXaUwSxVD2fgkNXOfdK+0yqp5DD4MWzZX8EZyOiyT LfRRdCvO/4w50vs= =v5em -----END PGP SIGNATURE-----
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