Your message dated Thu, 29 Sep 2022 15:34:28 +0000
with message-id <e1odvys-00fphp...@fasolo.debian.org>
and subject line Bug#1018972: fixed in blasr 5.3.5+dfsg-5
has caused the Debian Bug report #1018972,
regarding blasr autopkgtest regression with pbbam 2.1.0
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1018972: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1018972
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: pbbam
Version: 2.1.0+dfsg-1
Severity: serious
Affects: blasr 5.3.5+dfsg-4
User: ubuntu-de...@lists.ubuntu.com
Usertags: origin-ubuntu kinetic
Hi Andreas,
blasr's autopkgtests fail on amd64 when blasr is rebuilt against pbbam
2.1.0:
[...]
autopkgtest [11:27:53]: test run-unit-test: [-----------------------
[INFO] 2022-08-28T11:27:53 [blasr] started.
[INFO] 2022-08-28T11:27:53 [blasr] ended.
[INFO] 2022-08-28T11:27:53 [blasr] started.
[INFO] 2022-08-28T11:27:53 [blasr] ended.
output: OK
md5sum: alignment.sam.check: FAILED
WARNING: 1 computed checksum did NOT match
autopkgtest [11:27:54]: test run-unit-test: -----------------------]
[...]
(https://ci.debian.net/packages/b/blasr/unstable/amd64/)
Unfortunately, Debian's autopkgtest infrastructure does not appropriately
handle autopkgtests for binNMUs, which means this regression did not block
pbbam and the new blasr from entering testing.
I am not sure what the severity of this regression is, but since an
autopkgtest regression would normally block testing promotion, I have filed
this bug as 'serious'. If it's determined that the impact on blasr doesn't
make blasr unreleasable, feel free to downgrade.
--
Steve Langasek Give me a lever long enough and a Free OS
Debian Developer to set it on, and I can move the world.
Ubuntu Developer https://www.debian.org/
slanga...@ubuntu.com vor...@debian.org
signature.asc
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--- End Message ---
--- Begin Message ---
Source: blasr
Source-Version: 5.3.5+dfsg-5
Done: Nilesh Patra <nil...@debian.org>
We believe that the bug you reported is fixed in the latest version of
blasr, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1018...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <nil...@debian.org> (supplier of updated blasr package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 29 Sep 2022 20:51:45 +0530
Source: blasr
Architecture: source
Version: 5.3.5+dfsg-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nil...@debian.org>
Closes: 1018972
Changes:
blasr (5.3.5+dfsg-5) unstable; urgency=medium
.
* Team Upload.
* Update lintian overrides
* Fix test file substitution regex in autopkgtest (Closes: #1018972)
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