Source: openbabel Version: 3.1.1+dfsg-6 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20220728 ftbfs-bookworm
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > cd /<<PKGBUILDDIR>>/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL > -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER > -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 > -D__WXGTK__ -Dasciiformat_EXPORTS -I/<<PKGBUILDDIR>>/builddir/include > -I/<<PKGBUILDDIR>>/data -I/<<PKGBUILDDIR>>/include -I/usr/include/eigen3 > -I/usr/include/cairo -I/usr/include/libxml2 -isystem > /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.0 -isystem > /usr/include/wx-3.0 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 > -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread > -fopenmp -fPIC -std=gnu++11 -MD -MT > src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF > CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o > CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c > /<<PKGBUILDDIR>>/src/depict/asciipainter.cpp > In file included from /<<PKGBUILDDIR>>/src/depict/asciipainter.cpp:18: > /<<PKGBUILDDIR>>/include/openbabel/obutil.h: In member function ‘void > OpenBabel::OBStopwatch::Start()’: > /<<PKGBUILDDIR>>/include/openbabel/obutil.h:65:14: error: ‘clock’ was not > declared in this scope > 65 | start= clock(); > | ^~~~~ > /<<PKGBUILDDIR>>/include/openbabel/obutil.h:40:1: note: ‘clock’ is defined in > header ‘<ctime>’; did you forget to ‘#include <ctime>’? > 39 | #include <math.h> > +++ |+#include <ctime> > 40 | > /<<PKGBUILDDIR>>/include/openbabel/obutil.h: In member function ‘double > OpenBabel::OBStopwatch::Lap()’: > /<<PKGBUILDDIR>>/include/openbabel/obutil.h:70:13: error: ‘clock’ was not > declared in this scope > 70 | stop= clock(); > | ^~~~~ > /<<PKGBUILDDIR>>/include/openbabel/obutil.h:70:13: note: ‘clock’ is defined > in header ‘<ctime>’; did you forget to ‘#include <ctime>’? > /<<PKGBUILDDIR>>/include/openbabel/obutil.h:71:40: error: ‘CLOCKS_PER_SEC’ > was not declared in this scope > 71 | return((stop - start) / (double) CLOCKS_PER_SEC); > | ^~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/include/openbabel/obutil.h:71:40: note: the macro > ‘CLOCKS_PER_SEC’ had not yet been defined > In file included from /usr/include/time.h:33, > from /usr/include/pthread.h:23, > from > /usr/include/x86_64-linux-gnu/c++/12/bits/gthr-default.h:35, > from /usr/include/x86_64-linux-gnu/c++/12/bits/gthr.h:148, > from /usr/include/c++/12/ext/atomicity.h:35, > from /usr/include/c++/12/bits/ios_base.h:39, > from /usr/include/c++/12/ios:42, > from /usr/include/c++/12/istream:38, > from /usr/include/c++/12/sstream:38, > from /<<PKGBUILDDIR>>/include/openbabel/depict/painter.h:25, > from > /<<PKGBUILDDIR>>/include/openbabel/depict/asciipainter.h:21, > from /<<PKGBUILDDIR>>/src/depict/asciipainter.cpp:19: > /usr/include/x86_64-linux-gnu/bits/time.h:34: note: it was later defined here > 34 | #define CLOCKS_PER_SEC ((__clock_t) 1000000) > | > In file included from /<<PKGBUILDDIR>>/include/openbabel/op.h:25, > from /<<PKGBUILDDIR>>/src/ops/gen2D.cpp:22: > /<<PKGBUILDDIR>>/include/openbabel/plugin.h:41:42: warning: ‘template<class > _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated > [-Wdeprecated-declarations] > 41 | struct OBERROR CharPtrLess : public std::binary_function<const > char*,const char*, bool> > | ^~~~~~~~~~~~~~~ > In file included from /usr/include/c++/12/string:48, > from /usr/include/c++/12/bits/locale_classes.h:40, > from /usr/include/c++/12/bits/ios_base.h:41, > from /usr/include/c++/12/ios:42, > from /usr/include/c++/12/ostream:38, > from /usr/include/c++/12/iostream:39, > from /<<PKGBUILDDIR>>/src/ops/gen2D.cpp:21: > /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ > In file included from /<<PKGBUILDDIR>>/include/openbabel/format.h:22, > from /<<PKGBUILDDIR>>/include/openbabel/obconversion.h:37, > from /<<PKGBUILDDIR>>/include/openbabel/obmolecformat.h:36, > from /<<PKGBUILDDIR>>/src/formats/MNAformat.cpp:31: > /<<PKGBUILDDIR>>/include/openbabel/plugin.h:41:42: warning: ‘template<class > _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated > [-Wdeprecated-declarations] > 41 | struct OBERROR CharPtrLess : public std::binary_function<const > char*,const char*, bool> > | ^~~~~~~~~~~~~~~ > In file included from /usr/include/c++/12/string:48, > from /usr/include/c++/12/bits/locale_classes.h:40, > from /usr/include/c++/12/bits/ios_base.h:41, > from /usr/include/c++/12/ios:42, > from /usr/include/c++/12/ostream:38, > from /usr/include/c++/12/iostream:39, > from /<<PKGBUILDDIR>>/include/openbabel/obconversion.h:24: > /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ > make[4]: *** [src/formats/CMakeFiles/asciiformat.dir/build.make:93: > src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o] Error 1 The full build log is available from: http://qa-logs.debian.net/2022/07/28/openbabel_3.1.1+dfsg-6_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220728;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220728&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
