Your message dated Fri, 24 Jun 2022 15:19:54 +0000 with message-id <e1o4l6a-000ddq...@fasolo.debian.org> and subject line Bug#1013608: fixed in ncbi-entrez-direct 14.6.20210224+dfsg-6 has caused the Debian Bug report #1013608, regarding ncbi-entrez-direct: FTBFS: cannot find package "github.com/shirou/gopsutil/mem" to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1013608: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1013608 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: ncbi-entrez-direct Version: 14.6.20210224+dfsg-5 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20220624 ftbfs-bookworm Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' edirect.pl > bin/edirect > chmod +x bin/edirect > echo '#!/bin/sh' > bin/eaddress > echo 'exec /usr/bin/edirect -address "$@"' >> bin/eaddress > chmod +x bin/eaddress > echo '#!/bin/sh' > bin/eblast > echo 'exec /usr/bin/edirect -blast "$@"' >> bin/eblast > chmod +x bin/eblast > echo '#!/bin/sh' > bin/ecitmatch > echo 'exec /usr/bin/edirect -citmatch "$@"' >> bin/ecitmatch > chmod +x bin/ecitmatch > echo '#!/bin/sh' > bin/econtact > echo 'exec /usr/bin/edirect -contact "$@"' >> bin/econtact > chmod +x bin/econtact > echo '#!/bin/sh' > bin/enotify > echo 'exec /usr/bin/edirect -notify "$@"' >> bin/enotify > chmod +x bin/enotify > echo '#!/bin/sh' > bin/eproxy > echo 'exec /usr/bin/edirect -proxy "$@"' >> bin/eproxy > chmod +x bin/eproxy > echo '#!/bin/sh' > bin/espell > echo 'exec /usr/bin/edirect -spell "$@"' >> bin/espell > chmod +x bin/espell > echo '#!/bin/sh' > bin/ftp-cp > echo 'exec /usr/bin/edirect -ftpcp "$@"' >> bin/ftp-cp > chmod +x bin/ftp-cp > echo '#!/bin/sh' > bin/ftp-ls > echo 'exec /usr/bin/edirect -ftpls "$@"' >> bin/ftp-ls > chmod +x bin/ftp-ls > sed -e 's,xml2json,/usr/lib/ncbi-entrez-direct/&,; s/python/&3/; /to > precompiled/q' \ > transmute > bin/transmute.sh > echo 'exec /usr/lib/ncbi-entrez-direct/transmute "$@"' >> bin/transmute.sh > chmod +x bin/transmute.sh > sed -e 's,xml2json,/usr/lib/ncbi-entrez-direct/&,; s/python/&3/; /to > precompiled/q' \ > xtract > bin/xtract.sh > echo 'exec /usr/lib/ncbi-entrez-direct/xtract "$@"' >> bin/xtract.sh > chmod +x bin/xtract.sh > mkdir -p bin > sed -e '1s,^#!/bin/sh,#!/bin/bash,' index-extras > bin/index-extras > chmod +x bin/index-extras > mkdir -p bin > sed -e 's/`has-asp`/false # &/' download-ncbi-data > bin/download-ncbi-data > chmod +x bin/download-ncbi-data > mkdir -p bin > sed -e 's/`has-asp`/false # &/' download-pubmed > bin/download-pubmed > chmod +x bin/download-pubmed > mkdir -p bin > sed -e 's/`has-asp`/false # &/' download-sequence > bin/download-sequence > chmod +x bin/download-sequence > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' edirutil > bin/edirutil > chmod +x bin/edirutil > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' run-ncbi-converter > > bin/run-ncbi-converter > chmod +x bin/run-ncbi-converter > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' xml2json > bin/xml2json > chmod +x bin/xml2json > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' efetch > bin/efetch > chmod +x bin/efetch > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' efilter > bin/efilter > chmod +x bin/efilter > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' einfo > bin/einfo > chmod +x bin/einfo > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' elink > bin/elink > chmod +x bin/elink > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' epost > bin/epost > chmod +x bin/epost > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' esearch > bin/esearch > chmod +x bin/esearch > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' esummary > bin/esummary > chmod +x bin/esummary > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; s/ --no-check-certificate / /' nquire > > bin/nquire > chmod +x bin/nquire > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/fatih/ > ln -s /usr/share/gocode/src/github.com/fatih/color > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/fatih/color > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/gedex/ > ln -s /usr/share/gocode/src/github.com/gedex/inflector > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/gedex/inflector > make[1]: Circular > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/klauspost/cpuid <- > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/klauspost/cpuid > dependency dropped. > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/mattn/ > ln -s /usr/share/gocode/src/github.com/mattn/go-colorable > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/mattn/go-colorable > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/mattn/ > ln -s /usr/share/gocode/src/github.com/mattn/go-isatty > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/mattn/go-isatty > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/pbnjay/ > ln -s /<<PKGBUILDDIR>>/debian/vendor/github.com/pbnjay/memory > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/pbnjay/memory > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/rainycape/ > ln -s /usr/share/gocode/src/github.com/rainycape/unidecode > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/rainycape/unidecode > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/shirou/ > ln -s /usr/share/gocode/src/github.com/shirou/gopsutil > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/shirou/gopsutil > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/surgebase/ > ln -s /usr/share/gocode/src/github.com/surgebase/porter2 > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/surgebase/porter2 > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/ > ln -s /usr/share/gocode/src/golang.org/x/sys > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/sys > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/ > ln -s /usr/share/gocode/src/golang.org/x/text > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/text > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/klauspost > ln -s /usr/share/gocode/src/github.com/klauspost/cpuid/v2 \ > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/klauspost/cpuid > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/fiam > ln -s ../rainycape > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/fiam/gounidecode > go build -v -gccgoflags '-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro > -Wl,-z,now -Wl,--as-needed' -o bin/rchive rchive.go common.go > obj-x86_64-linux-gnu/src/github.com/pbnjay/memory/memory.go:3:9: cannot find > package "github.com/shirou/gopsutil/mem" in any of: > /usr/lib/go-1.18/src/github.com/shirou/gopsutil/mem (from $GOROOT) > > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/shirou/gopsutil/mem > (from $GOPATH) > make[1]: *** [debian/rules:144: bin/rchive] Error 1 The full build log is available from: http://qa-logs.debian.net/2022/06/24/ncbi-entrez-direct_14.6.20210224+dfsg-5_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220624;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220624&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Source: ncbi-entrez-direct Source-Version: 14.6.20210224+dfsg-6 Done: Nilesh Patra <nil...@debian.org> We believe that the bug you reported is fixed in the latest version of ncbi-entrez-direct, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1013...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nilesh Patra <nil...@debian.org> (supplier of updated ncbi-entrez-direct package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Fri, 24 Jun 2022 20:39:41 +0530 Source: ncbi-entrez-direct Architecture: source Version: 14.6.20210224+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Nilesh Patra <nil...@debian.org> Closes: 1013608 Changes: ncbi-entrez-direct (14.6.20210224+dfsg-6) unstable; urgency=medium . * Team upload. * d/rules: Pass right location of gopsutil/mem (Closes: #1013608) + gopsutil had been upgraded to new major upstream release with changed location, updated accordingly Checksums-Sha1: 032e34e02a234be7f189f6f4222084f770720538 2485 ncbi-entrez-direct_14.6.20210224+dfsg-6.dsc d992d2c2b7ed00db79587e7a0d7f2a2670560087 41412 ncbi-entrez-direct_14.6.20210224+dfsg-6.debian.tar.xz 4ffaeca8fd7b662d7dac475714ce8a94d69063ba 6716 ncbi-entrez-direct_14.6.20210224+dfsg-6_amd64.buildinfo Checksums-Sha256: 73716f975389637d9a0ebc6729e0522284e057c1e89a3bae7b29296a6475e7f6 2485 ncbi-entrez-direct_14.6.20210224+dfsg-6.dsc bc26bff017f145bb831fe06bedfdd30dd4869fc2bf70af9367076ad895f803db 41412 ncbi-entrez-direct_14.6.20210224+dfsg-6.debian.tar.xz db7f6329c032ea53aa609cd0332c8d1bb48bd8708c384d514e01fe482101e29f 6716 ncbi-entrez-direct_14.6.20210224+dfsg-6_amd64.buildinfo Files: 1ec88f859f4c1ddd224b279ce7d3254f 2485 science optional ncbi-entrez-direct_14.6.20210224+dfsg-6.dsc c510ebbfd21956fa04762f9a105a6b90 41412 science optional ncbi-entrez-direct_14.6.20210224+dfsg-6.debian.tar.xz 105dfc855b806feb3cddebb5d6ae4dee 6716 science optional ncbi-entrez-direct_14.6.20210224+dfsg-6_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmK11X0SHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nx4fsQAJUoZD7Jo7VaQ++f1cYHDNaFHhn4vmey abPxz3g0MkWhgCVbk30DBxuosErWwki0CwV65pA2pOFe80SXSjnOMvk4CrxpkLqo SDanMpHaAFWM7oOiUZQ9cxJ5HBQWY7ftFY694kz8EkV7fTeWcH5a6/vKVZnx1Wf/ b2L5lbzixvAjd/WMpjWQQ8MuryYZtWRkTsliIT6cqB5uMbBIU+zfbNYe4c4XmKNE mnkqVuaav8JyLKLM5adjMfAC4LmqTxYX4Zmk+zeHJvusvRTnC733Jle/MdYir0kS Z5gnaatK2E61QgoAq3WELuwUvs9eWbSRppvca2OGaY9/u9Rc/3bE6VHWacr08WEF 5Zw5sYkyT5aAEP9Kti3wcgFLPJMozNC38yLAR1JhxJ8fs45sgSsNxsbcN7NkF2TI qYYGYSCXEuRi6OkWdRN18n1noX2r9gBOsEYqZbbel+s6UPKEoWjiVuZVPk+IoISL Pksb412ESiFbH3nVdFZA17M6CWL/4gIrxlSgUDqf6HCo46VyWcJlHgCYlubHik8Z s7oGxi3fRCDJODYwkILqwL8tbv94ySDwhdIAYYexjz9NGpY06Lf8vNgEsaKNpKgH kEZwfIW86b2nAZErD41c3qXH+mAQAplIuEK3bnOFF1QqWDn/VwsNXhP3wPf/HIE8 LZsokZET4Y2P =xTCL -----END PGP SIGNATURE-----
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