Your message dated Mon, 16 May 2022 12:22:20 +0000
with message-id <e1nqzjw-0002hu...@fasolo.debian.org>
and subject line Bug#1008754: fixed in r-cran-loo 2.5.1-1
has caused the Debian Bug report #1008754,
regarding r-cran-loo: autopkgtest regression on arm64, armhf and i386: missing
value where TRUE/FALSE needed
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1008754: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1008754
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-cran-loo
Version: 2.5.0-1
Severity: serious
User: debian...@lists.debian.org
Usertags: regression
Dear maintainer(s),
With a recent upload of r-cran-loo the autopkgtest of r-cran-loo fails
in testing when that autopkgtest is run with the binary packages of
r-cran-loo from unstable. It passes when run with only packages from
testing. In tabular form:
pass fail
r-cran-loo from testing 2.5.0-1
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=r-cran-loo
https://ci.debian.net/data/autopkgtest/testing/arm64/r/r-cran-loo/20473561/log.gz
BEGIN TEST testthat.R
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
library(loo)
This is loo version 2.5.0
- Online documentation and vignettes at mc-stan.org/loo
- As of v2.0.0 loo defaults to 1 core but we recommend using as many as
possible. Use the 'cores' argument or set options(mc.cores = NUM_CORES)
for an entire session. > library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:loo':
compare
Sys.setenv("R_TESTS" = "")
test_check("loo")
[ FAIL 2 | WARN 0 | SKIP 5 | PASS 860 ]
== Skipped tests
===============================================================
* On CRAN (5)
== Failed tests
================================================================
-- Error (test_loo_moment_matching.R:291:3): loo_moment_match_split
works ------
Error in `if (any(k > too_high)) {
.warn("Some Pareto k diagnostic values are too high. ", .k_help())
} else if (any(k > high)) {
.warn("Some Pareto k diagnostic values are slightly high. ",
.k_help())
}`: missing value where TRUE/FALSE needed
Backtrace:
x
1. \-loo:::loo_moment_match_split(...) at test_loo_moment_matching.R:291:2
2. +-base::suppressWarnings(...)
3. | \-base::withCallingHandlers(...)
4. \-loo:::importance_sampling.default(...)
5. \-loo:::importance_sampling.matrix(...)
6. \-loo:::do_importance_sampling(...)
7. \-loo:::throw_pareto_warnings(pareto_k)
-- Failure (test_psis.R:141:3): psis_smooth_tail returns original tail
values if k is infinite --
val$k not equal to Inf.
1/1 mismatches
[1] NA - Inf == NA
[ FAIL 2 | WARN 0 | SKIP 5 | PASS 860 ]
Error: Test failures
Execution halted
autopkgtest [15:13:29]: test run-unit-test
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: r-cran-loo
Source-Version: 2.5.1-1
Done: Nilesh Patra <nil...@debian.org>
We believe that the bug you reported is fixed in the latest version of
r-cran-loo, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1008...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <nil...@debian.org> (supplier of updated r-cran-loo package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 16 May 2022 17:32:00 +0530
Source: r-cran-loo
Architecture: source
Version: 2.5.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net>
Changed-By: Nilesh Patra <nil...@debian.org>
Closes: 1008754
Changes:
r-cran-loo (2.5.1-1) unstable; urgency=medium
.
* Team upload.
* New upstream version 2.5.1
* Skip a failing test on archs other than M1 Mac (arm64) as well
(Closes: #1008754)
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--- End Message ---
