Your message dated Sun, 3 Apr 2022 22:02:32 +0300
with message-id <20220403190232.GA13543@localhost>
and subject line Re: Bug#1006002: pyparsing breaks cwltool autopkgtest: assert
main(["--debug", "--print-dot", cwl_path], stdout=stdout) == 0
has caused the Debian Bug report #1006002,
regarding pyparsing breaks cwltool autopkgtest: assert main(["--debug",
"--print-dot", cwl_path], stdout=stdout) == 0
to be marked as done.
This means that you claim that the problem has been dealt with.
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--
1006002: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1006002
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: pyparsing, cwltool
Control: found -1 pyparsing/3.0.7-1
Control: found -1 cwltool/3.1.20211104071347-3
Severity: serious
Tags: sid bookworm
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: breaks needs-update
Dear maintainer(s),
With a recent upload of pyparsing the autopkgtest of cwltool fails in
testing when that autopkgtest is run with the binary packages of
pyparsing from unstable. It passes when run with only packages from
testing. In tabular form:
pass fail
pyparsing from testing 3.0.7-1
cwltool from testing 3.1.20211104071347-3
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of pyparsing to
testing [1]. Due to the nature of this issue, I filed this bug report
against both packages. Can you please investigate the situation and
reassign the bug to the right package? I note that cwltool is newer in
unstable. I haven't tested if that "solves" the issue as the package is
blocked from migrating currently.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=pyparsing
https://ci.debian.net/data/autopkgtest/testing/amd64/c/cwltool/19310147/log.gz
=================================== FAILURES
===================================
________________________________ test_print_dot
________________________________
[gw14] linux -- Python 3.9.10 /usr/bin/python3
def test_print_dot() -> None:
# print Workflow
cwl_path = get_data("tests/wf/revsort.cwl")
cwl_posix_path = Path(cwl_path).as_posix()
expected_dot = pydot.graph_from_dot_data(
"""
digraph {{
graph [bgcolor="#eeeeee",
clusterrank=local,
labeljust=right,
labelloc=bottom
];
subgraph cluster_inputs {{
graph [label="Workflow Inputs",
rank=same,
style=dashed
];
"file://{cwl_posix_path}#workflow_input"
[fillcolor="#94DDF4",
label=workflow_input,
style=filled];
"file://{cwl_posix_path}#reverse_sort"
[fillcolor="#94DDF4",
label=reverse_sort,
style=filled];
}}
subgraph cluster_outputs {{
graph [label="Workflow Outputs",
labelloc=b,
rank=same,
style=dashed
];
"file://{cwl_posix_path}#sorted_output"
[fillcolor="#94DDF4",
label=sorted_output,
style=filled];
}}
"file://{cwl_posix_path}#rev" [fillcolor=lightgoldenrodyellow,
label=rev,
style=filled];
"file://{cwl_posix_path}#sorted"
[fillcolor=lightgoldenrodyellow,
label=sorted,
style=filled];
"file://{cwl_posix_path}#rev" ->
"file://{cwl_posix_path}#sorted";
"file://{cwl_posix_path}#sorted" ->
"file://{cwl_posix_path}#sorted_output";
"file://{cwl_posix_path}#workflow_input" ->
"file://{cwl_posix_path}#rev";
"file://{cwl_posix_path}#reverse_sort" ->
"file://{cwl_posix_path}#sorted";
}}
""".format(
cwl_posix_path=cwl_posix_path
)
)[0]
stdout = StringIO()
assert main(["--debug", "--print-dot", cwl_path], stdout=stdout) == 0
E AssertionError: assert 1 == 0
E + where 1 = main(['--debug', '--print-dot',
'/usr/lib/python3/dist-packages/cwltool/tests/wf/revsort.cwl'],
stdout=<_io.StringIO object at 0x7f634cc60550>)
/usr/lib/python3/dist-packages/cwltool/tests/test_examples.py:1083:
AssertionError
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
On Fri, Feb 18, 2022 at 09:02:16PM +0100, Paul Gevers wrote:
> Source: pyparsing, cwltool
> Control: found -1 pyparsing/3.0.7-1
> Control: found -1 cwltool/3.1.20211104071347-3
> Severity: serious
> Tags: sid bookworm
> X-Debbugs-CC: debian...@lists.debian.org
> User: debian...@lists.debian.org
> Usertags: breaks needs-update
>
> Dear maintainer(s),
>
> With a recent upload of pyparsing the autopkgtest of cwltool fails in
> testing when that autopkgtest is run with the binary packages of pyparsing
> from unstable. It passes when run with only packages from testing. In
> tabular form:
>
> pass fail
> pyparsing from testing 3.0.7-1
> cwltool from testing 3.1.20211104071347-3
> all others from testing from testing
>...
The problem seems to have been whatthing different that fixed itself
or was fixed a month ago:
https://ci.debian.net/packages/c/cwltool/testing/amd64/
3.1.20211104071347-3 2022-03-01 17:15:36 UTC pyparsing/3.0.7-1
src:pyparsing from unstable
pass
3.1.20211104071347-3 2022-02-28 16:14:55 UTC pyparsing/3.0.7-1
src:pyparsing from unstable
fail
cu
Adrian
--- End Message ---
