Source: macromoleculebuilder Version: 3.5+dfsg-4 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20220326 ftbfs-bookworm
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > /usr/bin/c++ -DBuildNtC -DLEPTON_BUILDING_STATIC_LIBRARY -DLepton_USAGE > -DMMBlib_EXPORTS -DUSE_MMB_CONSTEXPR -DUSE_OPENMM -isystem > /<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem > /usr/include/openmm -isystem /usr/include/openmm/reference -isystem /include > -isystem /<<PKGBUILDDIR>>/3rdparty/Lepton1.3/include -D BuildNtC -D > USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -O0 > -fvisibility=hidden -O3 -DNDEBUG -fPIC -DMMB_BUILDING_SHARED_LIBRARY > -std=c++14 -MD -MT CMakeFiles/MMBlib.dir/src/CifOutput.cpp.o -MF > CMakeFiles/MMBlib.dir/src/CifOutput.cpp.o.d -o > CMakeFiles/MMBlib.dir/src/CifOutput.cpp.o -c > /<<PKGBUILDDIR>>/src/CifOutput.cpp > In file included from /usr/include/gemmi/to_mmcif.hpp:80, > from /<<PKGBUILDDIR>>/src/CifOutput.cpp:10: > /usr/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system > stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] > 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may > not work." > | ^~~~~~~ > /<<PKGBUILDDIR>>/src/DensityMap.cpp: In member function ‘void > DensityMap::loadParametersAndDensity_CCP4MAP()’: > /<<PKGBUILDDIR>>/src/DensityMap.cpp:476:64: error: ‘gemmi::GridSetup’ has not > been declared > 476 | map.setup ( > gemmi::GridSetup::ReorderOnly, NAN ); > | > ^~~~~~~~~ > [ 68%] Building CXX object CMakeFiles/MMBlib.dir/src/ProgressWriter.cpp.o > /usr/bin/c++ -DBuildNtC -DLEPTON_BUILDING_STATIC_LIBRARY -DLepton_USAGE > -DMMBlib_EXPORTS -DUSE_MMB_CONSTEXPR -DUSE_OPENMM -isystem > /<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem > /usr/include/openmm -isystem /usr/include/openmm/reference -isystem /include > -isystem /<<PKGBUILDDIR>>/3rdparty/Lepton1.3/include -D BuildNtC -D > USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -O0 > -fvisibility=hidden -O3 -DNDEBUG -fPIC -DMMB_BUILDING_SHARED_LIBRARY > -std=c++14 -MD -MT CMakeFiles/MMBlib.dir/src/ProgressWriter.cpp.o -MF > CMakeFiles/MMBlib.dir/src/ProgressWriter.cpp.o.d -o > CMakeFiles/MMBlib.dir/src/ProgressWriter.cpp.o -c > /<<PKGBUILDDIR>>/src/ProgressWriter.cpp > [ 71%] Building CXX object > CMakeFiles/MMBlib.dir/src/NTC_PARAMETER_READER.cpp.o > /usr/bin/c++ -DBuildNtC -DLEPTON_BUILDING_STATIC_LIBRARY -DLepton_USAGE > -DMMBlib_EXPORTS -DUSE_MMB_CONSTEXPR -DUSE_OPENMM -isystem > /<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem > /usr/include/openmm -isystem /usr/include/openmm/reference -isystem /include > -isystem /<<PKGBUILDDIR>>/3rdparty/Lepton1.3/include -D BuildNtC -D > USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -O0 > -fvisibility=hidden -O3 -DNDEBUG -fPIC -DMMB_BUILDING_SHARED_LIBRARY > -std=c++14 -MD -MT CMakeFiles/MMBlib.dir/src/NTC_PARAMETER_READER.cpp.o -MF > CMakeFiles/MMBlib.dir/src/NTC_PARAMETER_READER.cpp.o.d -o > CMakeFiles/MMBlib.dir/src/NTC_PARAMETER_READER.cpp.o -c > /<<PKGBUILDDIR>>/src/NTC_PARAMETER_READER.cpp > make[3]: *** [CMakeFiles/MMBlib.dir/build.make:345: > CMakeFiles/MMBlib.dir/src/DensityMap.cpp.o] Error 1 The full build log is available from: http://qa-logs.debian.net/2022/03/26/macromoleculebuilder_3.5+dfsg-4_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
